Browse Element(s) Details


Os.9180.1.S1_at

Description gb:CR286028
DB_XREF= gi:44672594
DB_XREF=CR286028
CLONE=y688h07p3
TID=Os.9180.1
CNT=6
FEA=EST
TIER=ConsEnd
STK=4
UG=Os.9180 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_181156.1 (A.thaliana) unknown protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3168011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g31650NANA10+16260908..16261747glycosyl transferase family 8 protein, putative
LOC_Os10g31660Os.11337.1.S1_at11/1110+16262909..16263701expressed protein
LOC_Os10g31670Os.46476.1.S1_at11/1110+16270116..16270931expressed protein
LOC_Os10g31680Os.9180.1.S1_at11/1110+16278418..16279130expressed protein
LOC_Os10g31690Os.46829.1.S1_at11/1110+16284309..16285065hypothetical protein
LOC_Os10g31700OsAffx.20289.1.S1_at11/1110+16287233..16288940hypothetical protein
LOC_Os10g31710Os.46829.1.S1_at2/1110+16291738..16292313hypothetical protein
LOC_Os10g31710Os.46669.1.A1_at1/1110+16291738..16292313hypothetical protein
LOC_Os10g31720Os.21894.1.S1_at9/1110+16296433..16297165expressed protein
LOC_Os10g31720Os.46829.1.S1_at1/1110+16296433..16297165expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003723molecular_functionRNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9180.1.S1_at--607--8311Chr10:16278827..16278851 (25 bp)
GGCTCAGGCTCAAGCCAAACTTCAC
LOC_Os10g31680
Os.9180.1.S1_at--194--331Chr10:16278795..16278819 (25 bp)
ATACTATGGTTATGGTGGGTCATCC
LOC_Os10g31680
Os.9180.1.S1_at--630--571Chr10:16278714..16278738 (25 bp)
ATCCAATGGTCATGGGTCCGGCAGT
LOC_Os10g31680
Os.9180.1.S1_at--1147--1091Chr10:16278692..16278716 (25 bp)
AGTGGTACGGGCTATGGCTCTAGCA
LOC_Os10g31680
Os.9180.1.S1_at--1103--8291Chr10:16278683..16278707 (25 bp)
GGCTATGGCTCTAGCACTGCTAATA
LOC_Os10g31680
Os.9180.1.S1_at--1093--5091Chr10:16278670..16278694 (25 bp)
GCACTGCTAATAACTACTACTATGG
LOC_Os10g31680
Os.9180.1.S1_at--229--3091Chr10:16278662..16278686 (25 bp)
AATAACTACTACTATGGACCATATG
LOC_Os10g31680
Os.9180.1.S1_at--856--2031Chr10:16278652..16278676 (25 bp)
ACTATGGACCATATGCAAATGCAAA
LOC_Os10g31680
Os.9180.1.S1_at--138--2971Chr10:16278505..16278529 (25 bp)
AATGGAGCCCACTATGTTTCGTACC
LOC_Os10g31680
Os.9180.1.S1_at--918--3691Chr10:16278494..16278518 (25 bp)
CTATGTTTCGTACCATGTCTATGAA
LOC_Os10g31680
Os.9180.1.S1_at--145--10811Chr10:16278448..16278472 (25 bp)
TTGTACTTGTTTCATGTGTTGTGCA
LOC_Os10g31680
Target Sequence 
GGCTCAGGCTCAAGCCAAACTTCACNAAATGGATACTATGGTTATGGTGGGTCATCCAGTGCTANCGGTGCTGGTGTTGG
TGNTGGTGCTGGACAAGCCGGTGGTTATTGGCCATCCAATGGTCATGGGTCCGGCAGTGGTACGGGCTATGGCTCTAGCA
CTGCTAATAACTACTACTATGGACCATATGCAAATGCAAATGCTGGTGGCAATGGTGGCGGTAATGGTCAAGGCCAATAT
GGTGGCAGTGGCGGTGGTGGAGGAGCTGGAGTTGGATCTGGTGATGCCAGCCCTTAATTTCCTTCGTAAAGGAAATTTTA
AAAATGGAGCCCACTATGTTTCGTACCATGTCTATGAAGTAGAATTTGTTCTCATTTATTTGTACTTGTTTCATGTGTTG
TGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9180.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis