Browse Element(s) Details


Os.9262.1.S2_at

Description gb:AK121413.1
DB_XREF= gi:37991036
TID=Os.9262.1
CNT=34
FEA=FLmRNA
TIER=FL+Stack
STK=13
UG=Os.9262 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001M02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023133A05, full insert sequence.
FL= gb:AK098846.1 gb:AK121413.1 gb:AK111509.1 gb:AK111847.1 gb:AK098891.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2172011/11Vacuolar sorting receptor 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g21680OsAffx.25184.2.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680Os.15463.1.S1_x_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21680OsAffx.25184.1.S1_at11/113+12353041..12359161phospholipid-translocating P-type ATPase, flippase family protein, expressed
LOC_Os03g21690Os.8297.1.S1_at10/113+12359231..12364386Lung seven transmembrane receptor family protein, expressed
LOC_Os03g21700Os.54916.1.S1_at11/113+12368897..12370451expressed protein
LOC_Os03g21710NANA3+12373502..12375288WRKY DNA binding domain containing protein
LOC_Os03g21720Os.9262.1.S1_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21720Os.9262.1.S2_at11/113+12380772..12387306Vacuolar sorting receptor 1 precursor, putative, expressed
LOC_Os03g21730Os.50062.1.S1_at11/113+12390108..12393951leucine-rich repeat transmembrane protein kinase, putative, expressed
LOC_Os03g21740Os.27048.1.S1_at11/113+12401416..12410317Valyl-tRNA synthetase, putative
LOC_Os03g21750OsAffx.12979.1.S1_at11/113+12412084..12412909hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006623biological_processprotein targeting to vacuole
GO:0006886biological_processintracellular protein transport
GO:0006896biological_processGolgi to vacuole transport
GO:0005794cellular_componentGolgi apparatus
GO:0005802cellular_componentGolgi trans face
GO:0005886cellular_componentplasma membrane
GO:0005887cellular_componentintegral to plasma membrane
GO:0017119cellular_componentGolgi transport complex
GO:0009940molecular_functionamino-terminal vacuolar sorting propeptide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9262.1.S2_at--670--5931Chr03:12385345..12385514 (25 bp)
GAGCATGACACTTGTCTCAGCAAGG
LOC_Os03g21720
Os.9262.1.S2_at--971--2911Chr03:12386578..12386602 (25 bp)
AAGGAGGCTACGTCAGCTGTTGGCT
LOC_Os03g21720
Os.9262.1.S2_at--814--5891Chr03:12386806..12386830 (25 bp)
GAGCTACATGGATTCGGAGATTCGC
LOC_Os03g21720
Os.9262.1.S2_at--293--8051Chr03:12386821..12386845 (25 bp)
GGAGATTCGCGCGATCATGGCCCAG
LOC_Os03g21720
Os.9262.1.S2_at--832--411Chr03:12386883..12386907 (25 bp)
ATCATGTCGCGCATGCTGGTGATGA
LOC_Os03g21720
Os.9262.1.S2_at--403--6291Chr03:12386903..12386927 (25 bp)
GATGATATTTGAAACGGCACTCCTT
LOC_Os03g21720
Os.9262.1.S2_at--654--4251Chr03:12386930..12386954 (25 bp)
CCGGGTGCGCGAACATTTCATATGT
LOC_Os03g21720
Os.9262.1.S2_at--811--10111Chr03:12386950..12386974 (25 bp)
TATGTGTACTGATGCACCGGTGGCC
LOC_Os03g21720
Os.9262.1.S2_at--650--1771Chr03:12386965..12386989 (25 bp)
ACCGGTGGCCATCGACTTTACAGGG
LOC_Os03g21720
Os.9262.1.S2_at--741--10231Chr03:12387113..12387137 (25 bp)
TATTGTGACAGTTTTAGCCCTTCCT
LOC_Os03g21720
Os.9262.1.S2_at--995--7191Chr03:12387194..12387218 (25 bp)
GTCGTGTAAATACCTGTCTGTTCTT
LOC_Os03g21720
Target Sequence 
GAGCATGACACTTGTCTCAGCAAGGAGGCTACGTCAGCTGTTGGCTGGAGTTTTCTGTGGGTTATTTTCTTTGGACTTGT
TCTTGCTGGGGTCGGAGCATATGCGGTGTATAAATACAGGCTACGGAGCTACATGGATTCGGAGATTCGCGCGATCATGG
CCCAGTACATGCCTTTGGATAACCAAGAAGCAGCTAACCAACATCATGTCGCGCATGCTGGTGATGATATTTGAAACGGC
ACTCCTTTCCCGGGTGCGCGAACATTTCATATGTGTACTGATGCACCGGTGGCCATCGACTTTACAGGGGTCAACTGGGC
GCAAAAGATAGTGTGTGTGCGCGAGAAAGATTAGCCGTATACATGTATGATTGTAAGAGAGACATCGTTTGAGATCATCT
TTCTGTAAAACCCAAAGAACAGCATAGGCAAATATTGTGACAGTTTTAGCCCTTCCTCAGACTCAGCTGCTCCTGCTGCA
TACATGAGTACTGAATACATGATACATTCAAATGTCGTGTAAATACCTGTCTGTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9262.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis