Browse Element(s) Details


Os.9292.1.S1_at

Description gb:AK111536.1
DB_XREF= gi:37988199
TID=Os.9292.1
CNT=23
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9292 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-034-E01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013031I11, full insert sequence.
FL= gb:AK111998.1 gb:AK111536.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3937011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein
LOC_Os11g39360Os.52546.1.S1_at10/1111+22925937..22928601pentatricopeptide, putative, expressed
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os11g39380NANA11+22942159..22942671hypothetical protein
LOC_Os11g39390OsAffx.19251.1.S1_at11/1111+22943123..22943461hypothetical protein
LOC_Os11g39400OsAffx.31384.1.S1_at11/1111+22952630..22954042hypothetical protein
LOC_Os11g39410OsAffx.31385.1.S1_at11/1111+22954846..22957148hypothetical protein
LOC_Os11g39410Os.54998.1.S1_at1/1111+22954846..22957148hypothetical protein
LOC_Os11g39420OsAffx.19252.1.S1_at11/1111+22958615..22964763Jacalin-like lectin domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0005886cellular_componentplasma membrane
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9292.1.S1_at--378--10711Chr11:22930460..22930484 (25 bp)
TTGCCCGGCGGCATCAGCATGAGAT
LOC_Os11g39370
Os.9292.1.S1_at--1111--691Chr11:22930442..22930466 (25 bp)
ATGAGATGAACCAACAGCGCAGGCT
LOC_Os11g39370
Os.9292.1.S1_at--307--1651Chr11:22930427..22930451 (25 bp)
AGCGCAGGCTGTTCAGCTTCAGTGA
LOC_Os11g39370
Os.9292.1.S1_at--547--6751Chr11:22930417..22930441 (25 bp)
GTTCAGCTTCAGTGAGGAGTCTCTC
LOC_Os11g39370
Os.9292.1.S1_at--765--7351Chr11:22930300..22930324 (25 bp)
GTGAAGGAGCGAGGAGTCTCTCAAT
LOC_Os11g39370
Os.9292.1.S1_at--197--4871Chr11:22930258..22930282 (25 bp)
GCTATCCGGTGGCAGATAACTGGAA
LOC_Os11g39370
Os.9292.1.S1_at--739--8131Chr11:22930144..22930168 (25 bp)
GGAATAGCCTAGAGTCCTCACGGTT
LOC_Os11g39370
Os.9292.1.S1_at--328--6111Chr11:22930133..22930157 (25 bp)
GAGTCCTCACGGTTTGCATAAGTAA
LOC_Os11g39370
Os.9292.1.S1_at--161--2571Chr11:22930110..22930134 (25 bp)
AACTGTATCTAACCTTTATGCTGTG
LOC_Os11g39370
Os.9292.1.S1_at--139--7371Chr11:22930088..22930112 (25 bp)
GTGAACACAATGTCGTGCAGCTACA
LOC_Os11g39370
Os.9292.1.S1_at--482--9031Chr11:22930073..22930097 (25 bp)
TGCAGCTACATCTCGTTCAGACATT
LOC_Os11g39370
Target Sequence 
TTGCCCGGCGGCATCAGCATGAGATGAACCAACAGCGCAGGCTGTTCAGCTTCAGTGAGGAGTCTCTCAATATCCAGGAA
GCCATTCAGCTATCCAGTGGCAGATAACTGGAAGATCATACAATTGTATCACATGAGCTTCACTTGTTTCCCAAGAAAGG
GTGAAGGAGCGAGGAGTCTCTCAATATCCAGGAAGACATTCAGCTATCCGGTGGCAGATAACTGGAAGATCATACAATTG
TATCACATGAGCTTCACTTGTTTCCCAAGAAAGGGTGAANGGAGACAACAGTACTCNCTATAGTTGTGGATTGTTAGGAA
TAGCCTAGAGTCCTCACGGTTTGCATAAGTAACTGTATCTAACCTTTATGCTGTGAACACAATGTCGTGCAGCTACATCT
CGTTCAGACATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9292.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis