Browse Element(s) Details


Os.9352.1.S1_a_at

Description gb:AK058681.1
DB_XREF= gi:32968699
TID=Os.9352.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.9352 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs C26545(C12561),AU091755(C12561)~similar to Nipped-B gene product (OJ1123_C12.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-019-A04, full insert sequence.
FL= gb:AK058681.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0194011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01910Os.5376.1.S1_at11/117+554328..556672expressed protein
LOC_Os07g01920Os.14676.1.S1_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01920Os.14676.1.S1_a_at11/117+557663..561469nucleolar GTP-binding protein 1, putative, expressed
LOC_Os07g01930Os.4673.1.S1_a_at10/117+561642..564353Ferredoxin, 2Fe-2S, putative, expressed
LOC_Os07g01940Os.9352.1.S1_a_at11/117+573863..580491expressed protein
LOC_Os07g01950Os.10404.1.S1_at11/117+581828..585086expressed protein
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9352.1.S1_a_at--354--312Chr07:579767..579791 (25 bp)
ATACCAACACCAGTTTGCCGAGCTG
LOC_Os07g01940
Os.9352.1.S1_a_at--31--6331Chr07:579799..579820 (22 bp)
GATGCAGCACGTGTATACCAGGATT
LOC_Os07g01940
Os.9352.1.S1_a_at--313--9111Chr07:579958..579982 (25 bp)
TGCTGCGAGAAGACACCGTGGACTA
LOC_Os07g01940
Os.9352.1.S1_a_at--1057--6251Chr07:579986..580010 (25 bp)
GATGTACACCGTTTCGGCCCAGAAA
LOC_Os07g01940
Os.9352.1.S1_a_at--544--2771Chr07:580046..580070 (25 bp)
AAGACCGGCGGCTGTTACAAGAGGC
LOC_Os07g01940
Os.9352.1.S1_a_at--133--2791Chr07:580136..580160 (25 bp)
AAGAGTGCTGGACTTCAGCGCTCAG
LOC_Os07g01940
Os.9352.1.S1_a_at--849--2831Chr07:580189..580213 (25 bp)
AAGTCTGACTGGCTGCTGACTGACT
LOC_Os07g01940
Os.9352.1.S1_a_at--642--3871Chr07:580212..580236 (25 bp)
CTGTTGTTGGTGCTTCTTGTGTACA
LOC_Os07g01940
Os.9352.1.S1_a_at--953--10271Chr07:580373..580397 (25 bp)
TTTGCTTGCTGTTGCCCAATTTAGA
LOC_Os07g01940
Os.9352.1.S1_a_at--370--1311Chr07:580395..580419 (25 bp)
AGATGTTGTAATTGCTCTCGGGCTC
LOC_Os07g01940
Os.9352.1.S1_a_at--1052--7571Chr07:580414..580438 (25 bp)
GGGCTCTGGCAATACTCCAACAAAC
LOC_Os07g01940
Target Sequence 
ATACCAACACCAGTTTGCCGAGCTGCCCGCAGGATGCAGCACGTGTATACCAGGATTTCAAGACAGTGCTGCGAGAAGAC
ACCGTGGACTACGGGATGTACACCGTTTCGGCCCAGAAAAAACGTCCGACTCCAAGAAGCTCGTCGAGAGTAAGAAGACC
GGCGGCTGTTACAAGAGGCCGTGGTGGTGGTGGTGGTGGTGGTGATGAGGACACCGATGACGAAGATTGGACTGGTGGTG
GAGCAAGAGTGCTGGACTTCAGCGCTCAGGGTGGGCGAGTAACAAGGCAGAGGGTCCAAGTCTGACTGGCTGCTGACTGA
CTGTTGTTGGTGCTTCTTGTGTACATTGTAGGAAATTTTATAGGTAACAGGGGAGGTTTAGGTCGTCTTAGGGGCCATTG
TTAGTACATAGAAGCAGAAAAAAGGAAAGGAAGATATCTAGCTTTTACTTAGATGCCATTAATTTGGAGCACTCCTTTTC
TTTTGCTTGCTGTTGCCCAATTTAGATGTTGTAATTGCTCTCGGGCTCTGGCAATACTCCAACAAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9352.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis