Browse Element(s) Details


Os.9377.1.S1_at

Description gb:AF443601.1
DB_XREF= gi:17149109
TID=Os.9377.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9377 (NCBI UniGene Cluster)
DEF=Oryza sativa clathrin assembly protein AP17-like protein mRNA, complete cds.
PROD=clathrin assembly protein AP17-like protein
FL= gb:AK104086.1 gb:AF443601.1 gb:AK069232.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1056011/11Clathrin coat assembly protein AP17, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10530NANA12+5576941..5577543hypothetical protein
LOC_Os12g10540Os.2345.2.S1_a_at10/1112+5583729..5589271Floral homeotic protein AGAMOUS, putative, expressed
LOC_Os12g10550Os.20294.1.S1_at11/1112+5595768..5597853transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g10560Os.9377.1.S1_at11/1112+5601182..5605132Clathrin coat assembly protein AP17, putative, expressed
LOC_Os12g10570OsAffx.30475.5.S1_x_at11/1112+5611052..5612326ATP synthase beta chain, putative
LOC_Os12g10580OsAffx.26050.2.S2_x_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.26050.37.S1_s_at11/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32219.1.S1_x_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative
LOC_Os12g10580OsAffx.32220.1.S1_s_at9/1112+5613126..5617041Ribulose bisphosphate carboxylase large chain precursor, putative

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0030125cellular_componentclathrin vesicle coat
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9377.1.S1_at--320--9051Chr12:5602837..5602861 (25 bp)
TGCAGGACTGTTTTTCTCAATGTGT
LOC_Os12g10560
Os.9377.1.S1_at--19--651Chr12:5602897..5602921 (25 bp)
ATGCATCCACTTGTTTGTCGAGATA
LOC_Os12g10560
Os.9377.1.S1_at--719--7991Chr12:5603866..5603890 (25 bp)
GGATGAGTTTATTCTCGCTGGAGAA
LOC_Os12g10560
Os.9377.1.S1_at--121--5691Chr12:5604857..5604881 (25 bp)
GACATTGCTCTGCATTTTGTACAAT
LOC_Os12g10560
Os.9377.1.S1_at--423--10831Chr12:5604894..5604918 (25 bp)
TTGTGTTATACCTAGCTCACCTACA
LOC_Os12g10560
Os.9377.1.S1_at--410--1751Chr12:5604912..5604936 (25 bp)
ACCTACATTTTCACCGGCTGTTCAT
LOC_Os12g10560
Os.9377.1.S1_at--985--8331Chr12:5604927..5604951 (25 bp)
GGCTGTTCATCTGTGTAAGTCTCCT
LOC_Os12g10560
Os.9377.1.S1_at--204--3811Chr12:5604947..5604971 (25 bp)
CTCCTTTGTTGCTTGGTGAGGCTAC
LOC_Os12g10560
Os.9377.1.S1_at--685--7391Chr12:5604962..5604986 (25 bp)
GTGAGGCTACTACACACTGCTAGAT
LOC_Os12g10560
Os.9377.1.S1_at--665--10371Chr12:5605063..5605087 (25 bp)
TTTTCACCTGTCTGATTGGGAGTCT
LOC_Os12g10560
Os.9377.1.S1_at--527--7651Chr12:5605080..5605104 (25 bp)
GGGAGTCTGATCTTTTGATGCTGAA
LOC_Os12g10560
Target Sequence 
TGCAGGACTGTTTTTCTCAATGTGTGTGGATATCACTGACAATGAGTTGGCATACTTGGAATGCATCCACTTGTTTGTCG
AGATATTAGATCATTTCTTCAGCAATGTGTGTGAACTCGACTTAGTATTTAATTTCCACAAGGTTTATTTGATATTGGAT
GAGTTTATTCTCGCTGGAGAACTTCAAGAGACAAGCAAAAGGGCAATAATAGAGCGAATGGGTGAGCTTGAGAAGCTGGA
ATAAGAAGAAACGGTGTACACTAGCGTACATGGGCAGATGATCAAGAGTGTTGCCATCTCTTTCTCTGCCGTGCCAAGAC
ATTGCTCTGCATTTTGTACAATTCTTTGTAGCTATTGTGTTATACCTAGCTCACCTACATTTTCACCGGCTGTTCATCTG
TGTAAGTCTCCTTTGTTGCTTGGTGAGGCTACTACACACTGCTAGATTGTTCTGTTGATTACCATGGAATCAGTCATCTT
TGTGCATTTGCTTGAAGTAATCATCATTATAGCAATCTCTTTTTTTTCACCTGTCTGATTGGGAGTCTGATCTTTTGATG
CTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9377.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis