Browse Element(s) Details


Os.9419.1.S1_at

Description gb:CA767339
DB_XREF= gi:27547269
DB_XREF=AF53-Rpf_07_E12_T7_036.ab1
CLONE=C0002412
TID=Os.9419.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9419 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_201070.1 (A.thaliana) putative protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0951010/11retrotransposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g09460OsAffx.16174.1.S1_at11/117+4986453..4996726expressed protein
LOC_Os07g09470NANA7+4997119..4998846Cell Division Protein AAA ATPase family, putative, expressed
LOC_Os07g09480Os.56296.1.S1_at11/117+5002172..5004026ATPase, AAA family protein, expressed
LOC_Os07g09490OsAffx.28363.1.S1_at11/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09490OsAffx.25760.1.S1_x_at1/117+5007890..5009323Cell Division Protein AAA ATPase family, putative
LOC_Os07g09500OsAffx.16175.1.S1_at10/117+5011088..5012727hypothetical protein
LOC_Os07g09510Os.9419.1.S1_at10/117+5013651..5018509retrotransposon protein, putative, unclassified, expressed
LOC_Os07g09520OsAffx.28364.1.S1_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09520OsAffx.28364.1.S1_x_at11/117+5021990..5025978HIPL1 protein precursor, putative, expressed
LOC_Os07g09530OsAffx.28365.1.S1_at11/117+5028926..5032124hypothetical protein
LOC_Os07g09540Os.47463.1.S1_x_at5/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g09540Os.14491.2.S1_x_at4/117+5040350..5042412transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9419.1.S1_at--978--4311Chr07:5017054..5017078 (25 bp)
CCATTAGCACAACATACTCCTGAGC
LOC_Os07g09510
Os.9419.1.S1_at--833--8911NONE
TGAGCTCACAGCTATGGTTCCTGCA
NONE
Os.9419.1.S1_at--299--831Chr07:5017970..5017992 (23 bp)
ATGGTTCCTGCATCAGTTCGAGTTA
LOC_Os07g09510
Os.9419.1.S1_at--362--1431Chr07:5017997..5018021 (25 bp)
AGAATCGGCTCTCCTCAAACCAAAA
LOC_Os07g09510
Os.9419.1.S1_at--225--2471Chr07:5018042..5018066 (25 bp)
AACAACATCATCTTCTGCCCTGAAA
LOC_Os07g09510
Os.9419.1.S1_at--978--5531Chr07:5018063..5018087 (25 bp)
GAAACCGTCAGTGGCTCCAATTAGA
LOC_Os07g09510
Os.9419.1.S1_at--857--711Chr07:5018134..5018158 (25 bp)
ATGATTCCTACATGGCATTCTTGGA
LOC_Os07g09510
Os.9419.1.S1_at--474--9791Chr07:5018234..5018258 (25 bp)
TAAGCATGAGCCCTCTTTGCGTTAG
LOC_Os07g09510
Os.9419.1.S1_at--261--1091Chr07:5018257..5018281 (25 bp)
AGGGCTCACGAGTAGGTTTTCATGT
LOC_Os07g09510
Os.9419.1.S1_at--794--4331Chr07:5018291..5018315 (25 bp)
CCATGTCCATTTCCCCATGAGAAAA
LOC_Os07g09510
Os.9419.1.S1_at--739--4991Chr07:5018411..5018432 (22 bp)
GCATGATTGCCTATCTTCACAGGTT
LOC_Os07g09510
Target Sequence 
CCATTAGCACAACATACTCCTGAGCTCACAGCTATGGTTCCTGCATCAGTTCGAGTTAAGAGAGAATCGGCTCTCCTCAA
ACCAAAACCAAAGGTGCAACAGTCAGCAACAACATCATCTTCTGCCCTGAAACCGTCAGTGGCTCCAATTAGATCTGAGC
CCCGGCCTTCGTCCTCAGTATCCAAGCCACAAAGCATTGATGATTCCTACATGGCATTCTTGGAAGATATGAAGGAATTG
GGTGCTCTTGATGAGTAGCTCAATTAGTCTGACTGCAAATTGCAGTTGTTGACATGAACTAAGCATGAGCCCTCTTTGCG
TTAGGGCTCACGAGTAGGTTTTCATGTACTCAGAAACCATGTCCATTTCCCCATGAGAAAACAATATTCCAGATCTAGTT
TTGTGAAAATGGGGAAACGTTCATAATCAAATATCAGNTTGCTGNGCAACACAACTGTACCAAGTCAAATCAATAGAGCA
TGATTGCCTATCTTCACAGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9419.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis