Browse Element(s) Details


Os.9423.1.S1_at

Description gb:AK066353.1
DB_XREF= gi:32976371
TID=Os.9423.1
CNT=14
FEA=FLmRNA
TIER=FL+Stack
STK=6
UG=Os.9423 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) OsCLC-2 mRNA for chloride channel, partial cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063B06, full insert sequence.
FL= gb:AK066353.1 gb:AK069669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3519011/11Chloride channel protein CLC-c, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed
LOC_Os02g35200Os.11308.1.S1_at11/112+21159188..21159817molybdopterin converting factor, subunit 1 family protein, expressed
LOC_Os02g35210OsAffx.2866.1.S1_at11/112+21160810..21164084NB-ARC domain containing protein
LOC_Os02g35220Os.12954.1.S1_at1/112+21166531..21168014expressed protein
LOC_Os02g35230Os.51699.1.S1_at11/112+21169120..21174303expressed protein
LOC_Os02g35230Os.17676.2.S1_at1/112+21169120..21174303expressed protein
LOC_Os02g35240NANA2+21178266..21178778AP2 domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006821biological_processchloride transport
GO:0010167biological_processresponse to nitrate
GO:0005622cellular_componentintracellular
GO:0005247molecular_functionvoltage-gated chloride channel activity
GO:0005253molecular_functionanion channel activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9423.1.S1_at--254--10291Chr02:21146007..21146031 (25 bp)
TTTTGCCAAGCCAGGGTCAGGGAAA
LOC_Os02g35190
Os.9423.1.S1_at--574--2291Chr02:21145939..21145963 (25 bp)
AAATGTATGTGGATCTCCATCCCGT
LOC_Os02g35190
Os.9423.1.S1_at--206--5151Chr02:21145871..21145895 (25 bp)
GCAAAAGCTGCAATCCTATTCCGTG
LOC_Os02g35190
Os.9423.1.S1_at--857--1251Chr02:21145202..21145222 (21 bp)
AGATAGGCCACCCATTGTCGGAATT
LOC_Os02g35190
Os.9423.1.S1_at--244--7191Chr02:21145186..21145210 (25 bp)
GTCGGAATTCTCACGAGGCATGATT
LOC_Os02g35190
Os.9423.1.S1_at--640--7211Chr02:21145159..21145183 (25 bp)
GTCGAAGAACATATCCACGGGCTGT
LOC_Os02g35190
Os.9423.1.S1_at--980--9691Chr02:21145118..21145142 (25 bp)
TCACAAGTTCCACTCGACATCGATG
LOC_Os02g35190
Os.9423.1.S1_at--295--6531Chr02:21145086..21145110 (25 bp)
GATTTTTAAGCGTTTTGCCGCCACT
LOC_Os02g35190
Os.9423.1.S1_at--645--4531Chr02:21145070..21145094 (25 bp)
GCCGCCACTCGTTTTATGTGAAGTA
LOC_Os02g35190
Os.9423.1.S1_at--1019--9871Chr02:21144976..21145000 (25 bp)
TACATCGGTTGTAGCATATCCTCTT
LOC_Os02g35190
Os.9423.1.S1_at--830--4631Chr02:21144932..21144956 (25 bp)
GCGTATTTTGTCTCAGCTTGCTTAT
LOC_Os02g35190
Target Sequence 
TTTTGCCAAGCCAGGGTCAGGGAAAGGCTTGAAAATTCAGGACCTGGACTTCNCTGATGAGGAGATGGAAATGTATGTGG
ATCTCCATCCCGTTACAAACACCTCNCCTTATACGGTGGTTGAGACAATGTCACTCGCAAAAGCTGCAATCCTATTCCGT
GCACTAGGATTGAGGCACCTTTTGGTTGTGCCAAAGACNCCAGATAGGCCACCCATTGTCGGAATTCTCACGAGGCATGA
TTTCGTCGAAGAACATATCCACGGGCTGTTCCCAAATCTCAATCCTCACAAGTTCCACTCGACATCGATGGGAGGCTGAT
TTTTAAGCGTTTTGCCGCCACTCGTTTTATGTGAAGTATAGGAAGTGTTCATTATATGTAATTTACAAAATTGTGTCTGT
CATTTGTTGGAGAGAGCTCATCATCTGTACATCGGTTGTAGCATATCCTCTTTTACAGGATTCATCTTGTAGCGTATTTT
GTCTCAGCTTGCTTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9423.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis