Browse Element(s) Details


Os.23942.1.A1_at

Description gb:AK070645.1
DB_XREF= gi:32980669
TID=Os.23942.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23942 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023061L14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023061L14, full insert sequence.
FL= gb:AK069453.1 gb:AK070645.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3518011/11response regulator 7, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed
LOC_Os02g35190Os.9423.1.S1_at11/112+21144841..21155500Chloride channel protein CLC-c, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23942.1.A1_at--818--6291Chr02:21123314..21123338 (25 bp)
GATGATCTCCATCCCAGCTAAGCAT
LOC_Os02g35180
Os.23942.1.A1_at--163--9052Chr03:33710872..33710900 (23 bp)
TGCAGCAGCAGCTAAGATGTGATCT
NONE
Os.23942.1.A1_at--4--10591Chr02:21123179..21123203 (25 bp)
TTCTCAAGAGGATTCTAACCAGGTT
LOC_Os02g35180
Os.23942.1.A1_at--470--5451Chr02:21123033..21123057 (25 bp)
GAACGCATGATTTGAGTGGGCATCT
LOC_Os02g35180
Os.23942.1.A1_at--958--8611Chr02:21123017..21123041 (25 bp)
TGGGCATCTGGTGTCGTTTTTAATC
LOC_Os02g35180
Os.23942.1.A1_at--100--571Chr02:21122995..21123019 (25 bp)
ATCCTGATCTCGATTTGATACGCTG
LOC_Os02g35180
Os.23942.1.A1_at--797--6471Chr02:21122979..21123003 (25 bp)
GATACGCTGATGCAACTGTCCGGAG
LOC_Os02g35180
Os.23942.1.A1_at--531--5151Chr02:21122968..21122992 (25 bp)
GCAACTGTCCGGAGAAGCTTCTGCT
LOC_Os02g35180
Os.23942.1.A1_at--317--9091Chr02:21122858..21122882 (25 bp)
TGCTCTGCACCTCACGCTGAATGAG
LOC_Os02g35180
Os.23942.1.A1_at--18--9011Chr02:21122841..21122865 (25 bp)
TGAATGAGTTGACCGGATCTCCCGT
LOC_Os02g35180
Os.23942.1.A1_at--309--7971Chr02:21122827..21122851 (25 bp)
GGATCTCCCGTATTATATATCGTAA
LOC_Os02g35180
Target Sequence 
GATGATCTCCATCCCAGCTAAGCATGGGGGTTCTTAATTAATTCAGCTATAATATAATTTTCAACAGCCATGCATGCAGC
AGCAGCTAAGATGTGATCTTTCTAGGGGTAGATTTGTTACTTATTTGTTCTTAAATTCTCAAGAGGATTCTAACCAGGTT
ATTAATTATTTTCAGAGGTTTTTAAGTGGTACTATACTACTACTGCTACTTAGATTATTTTGCTGNGAGAGAAAAGAGTA
GCAGTACAGTAGCACCACAATTTGCTCATTTGTATAAAGGGGAACGCATGATTTGAGTGGGCATCTGGTGTCGTTTTTAA
TCCTGATCTCGATTTGATACGCTGATGCAACTGTCCGGAGAAGCTTCTGCTNNNNNNNNNNTCTCTCTCTCTCCCAAGAT
GTGTTTTTTTTTTCTTCTTTTTTTTCGCTCTCTTTCTCTCTGGGTGGGTGGACGTAGACGTCCACCTGCTCTGCACCTCA
CGCTGAATGAGTTGACCGGATCTCCCGTATTATATATCGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23942.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis