Browse Element(s) Details


Os.23148.1.A1_at

Description gb:AK067053.1
DB_XREF= gi:32977071
TID=Os.23148.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.23148 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013093J16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013093J16, full insert sequence.
FL= gb:AK067053.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3514410/11Zinc finger, C3HC4 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23148.1.A1_at--14--7631NONE
GGGAAACACAATGCTCTGTCTGCTT
NONE
Os.23148.1.A1_at--923--4891Chr02:21099355..21099379 (25 bp)
GCTTAGCAGACTATCAACCGGATGA
LOC_Os02g35144
Os.23148.1.A1_at--382--6311Chr02:21099335..21099359 (25 bp)
GATGAGCGGCTCCAGAGAATACCTC
LOC_Os02g35144
Os.23148.1.A1_at--715--1351Chr02:21099322..21099346 (25 bp)
AGAGAATACCTCCTTGTGGCCATAC
LOC_Os02g35144
Os.23148.1.A1_at--275--2371Chr02:21099214..21099238 (25 bp)
AAACCGCCAGCATTGATCCAGTGGA
LOC_Os02g35144
Os.23148.1.A1_at--354--5971Chr02:21099167..21099191 (25 bp)
GAGAACAGCTCTTTGGATGTACAGT
LOC_Os02g35144
Os.23148.1.A1_at--431--8751Chr02:21099150..21099174 (25 bp)
TGTACAGTATCAGGAGGGCCGCATT
LOC_Os02g35144
Os.23148.1.A1_at--330--1051Chr02:21099035..21099059 (25 bp)
AGAGTAACCACTGAGCCCCAAGTAG
LOC_Os02g35144
Os.23148.1.A1_at--1097--2931Chr02:21098959..21098983 (25 bp)
AAGGCTTCTGCTGATGTACCATGTC
LOC_Os02g35144
Os.23148.1.A1_at--1033--6971Chr02:21098944..21098968 (25 bp)
GTACCATGTCGTGGCGATCTGTATT
LOC_Os02g35144
Os.23148.1.A1_at--336--811Chr02:21098878..21098902 (25 bp)
ATGGGTAAATGGTCTAATCTCTGTA
LOC_Os02g35144
Target Sequence 
GGGAAACACAATGCTCTGTCTGCTTAGCAGACTATCAACCGGATGAGCGGCTCCAGAGAATACCTCCTTGTGGCCATACC
TTCCACATCGATTGCATCGACCACTGGCTCTCGACAAACACCACTTGCCCTCTTTGTCGAGTATCCCTCCTTCCATCCCC
CAAAACCGCCAGCATTGATCCAGTGGATTTGGAAGCACAGACCGTTGAAGAGAACAGCTCTTTGGATGTACAGTATCAGG
AGGGCCGCATTGACGAGAACACGCGACAGGAGGATCAGACATTGCAACAAGGTAGTGAGGGTCCAANGCATCAAGCTGAA
GAAAACGAAGAGACATCAGTCAGAGTAACCACTGAGCCCCAAGTAGAGNCCGAGGGGTCTCCAAGCACAACCTGCCGGCC
TTGTAAAACGAAGAAATAAGGCTTCTGCTGATGTACCATGTCGTGGCGATCTGTATTTTAGATGCTCATTAAGAGCGTAT
AAAGATGTCAGGTTATAGATGGGTAAATGGTCTAATCTCTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23148.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis