Browse Element(s) Details


Os.7291.1.S1_at

Description gb:AK068385.1
DB_XREF= gi:32978403
TID=Os.7291.1
CNT=17
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.7291 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013146D08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013146D08, full insert sequence.
FL= gb:AK068385.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3513011/11AIG1 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009618biological_processresponse to pathogenic bacteria
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.7291.1.S1_at--375--5971Chr02:21080902..21080926 (25 bp)
GAGAACTCGGGATGAACAGCTTGCA
LOC_Os02g35130
Os.7291.1.S1_at--945--4911Chr02:21080920..21080943 (24 bp)
GCTTGCAAACATTACCAACATGGTG
LOC_Os02g35130
Os.7291.1.S1_at--915--8211Chr02:21082166..21082190 (25 bp)
GGAATTCCGAAAGATGGCTTCTCAA
LOC_Os02g35130
Os.7291.1.S1_at--610--6231Chr02:21082178..21082202 (25 bp)
GATGGCTTCTCAACACAAGTGTTCT
LOC_Os02g35130
Os.7291.1.S1_at--954--10211Chr02:21082202..21082226 (25 bp)
TATTCTATGAGTAGCTTTCTCCTAG
LOC_Os02g35130
Os.7291.1.S1_at--469--6071Chr02:21082271..21082295 (25 bp)
GAGTTCAGAACAGTGCTCTAGGCTA
LOC_Os02g35130
Os.7291.1.S1_at--1080--7311Chr02:21082283..21082307 (25 bp)
GTGCTCTAGGCTATGTGGTTGACAT
LOC_Os02g35130
Os.7291.1.S1_at--13--10411Chr02:21082377..21082401 (25 bp)
TTTTGACTATCATCCCTGCTAGTTC
LOC_Os02g35130
Os.7291.1.S1_at--831--9311Chr02:21082389..21082413 (25 bp)
TCCCTGCTAGTTCATCCTTGTGAAA
LOC_Os02g35130
Os.7291.1.S1_at--1138--10231Chr02:21082421..21082445 (25 bp)
TTTGGTGATCGTCTTCTTCTGAAAA
LOC_Os02g35130
Os.7291.1.S1_at--682--2291Chr02:21082443..21082467 (25 bp)
AAATGATCGTTTCCACAAGTGTTGC
LOC_Os02g35130
Target Sequence 
GAGAACTCGGGATGAACAGCTTGCAAACATTACCAACATGGTGGAGGAAAAGCTGAATATCACTGTTGACAAGCTGCAAC
AGCAACTCATGGAAGAACAGAATGCAAGGCTAGAAGCAGAGAGGTTGGCAGCTGAAGCTAGGCTCCGATCAGATGAGGAG
ATCCGCAAGCTCAAAAAGCGCCTCGAGAAGGCCCAACAAGAAAATGAGGAATTCCGAAAGATGGCTTCTCAACACAAGTG
TTCTATTCTATGAGTAGCTTTCTCCTAGGATCAAGCTGCTGCCATGGTTGAATGCTCCGTGCATTGTTAATAGAGTTCAG
AACAGTGCTCTAGGCTATGTGGTTGACATAAAACTTTTGCTACTGGGCTATCTCATATCTGTAAATATACAGGTATTTGG
ATTTTTAATGTCCAAGGATTTTGACTATCATCCCTGCTAGTTCATCCTTGTGAAAAGTGAATTTTGGTGATCGTCTTCTT
CTGAAAATGATCGTTTCCACAAGTGTTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.7291.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis