Browse Element(s) Details


Os.21860.1.S1_at

Description gb:AK070026.1
DB_XREF= gi:32980050
TID=Os.21860.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.21860 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036G16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036G16, full insert sequence.
FL= gb:AK070026.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3514011/11Auxin response factor 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009733biological_processresponse to auxin stimulus
GO:0010150biological_processleaf senescence
GO:0016481biological_processnegative regulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21860.1.S1_at--379--851Chr02:21097634..21097658 (25 bp)
ATGGCATCCTTTGTCCAGTGCTCAG
LOC_Os02g35140
Os.21860.1.S1_at--853--8931Chr02:21097673..21097697 (25 bp)
TGACTGGTGGTAGACCTGCAAGAAC
LOC_Os02g35140
Os.21860.1.S1_at--180--291Chr02:21097735..21097759 (25 bp)
ATAGAGTGTCAAGCATTCATGTTCC
LOC_Os02g35140
Os.21860.1.S1_at--144--4171Chr02:21097859..21097883 (25 bp)
CGCCACTGGAGCTGTTCGTTTTAAC
LOC_Os02g35140
Os.21860.1.S1_at--1115--10291Chr02:21097932..21097956 (25 bp)
TTTCGGAAGTCGGAGCATTTGCTAA
LOC_Os02g35140
Os.21860.1.S1_at--179--8691Chr02:21097974..21097998 (25 bp)
TGTGCTTTCCTCCTGCTGAATGTAC
LOC_Os02g35140
Os.21860.1.S1_at--1119--8991Chr02:21097990..21098014 (25 bp)
TGAATGTACCTGTGCTTTTCCTCCT
LOC_Os02g35140
Os.21860.1.S1_at--40--8191Chr02:21098018..21098042 (25 bp)
GGAAGCCATCCAAATCTATGACAAT
LOC_Os02g35140
Os.21860.1.S1_at--456--3131Chr02:21098040..21098064 (25 bp)
AATTTTCTGTACTCACTTACCTGCA
LOC_Os02g35140
Os.21860.1.S1_at--628--3851Chr02:21098093..21098117 (25 bp)
CTGAACTGAACCTGATATGCCGCTT
LOC_Os02g35140
Os.21860.1.S1_at--1154--251Chr02:21098107..21098131 (25 bp)
ATATGCCGCTTCTCATCATTGTGAT
LOC_Os02g35140
Target Sequence 
ATGGCATCCTTTGTCCAGTGCTCAGTTTTGGTAAANTGGTGACTGGTGGTAGACCTGCAAGAACGGGGCCCGGGCCTCGC
CATCTCTCGNTGCACCAGTAAATAGAGTGTCAAGCATTCATGTTCCTTTCTTCCTGCAATGCATGGNGTATCATCATCCG
TAGNTAAGCATCAGTTNTTNTCCCCCCCCCCCCCCNNNNNNTGCATCCTGTTCGCAGNTCCGGTGCCGCCACTGGAGCTG
TTCGTTTTAACCCANCGGCATTCCTTCTTTTCTTTTTTTTTNACCGGGTGGTGTTTTTGCTTTCGGAAGTCGGAGCATTT
GCTAAGTTTTTTTTTCCTACGCTGTGCTTTCCTCCTGCTGAATGTACCTGTGCTTTTCCTCCTCGTGGAAGCCATCCAAA
TCTATGACAATTTTCTGTACTCACTTACCTGCATGTACATAGGAATGGAAATGGAACTGGACTGAACTGAACCTGATATG
CCGCTTCTCATCATTGTGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21860.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis