Browse Element(s) Details


Os.11754.1.A1_at

Description gb:AK065290.1
DB_XREF= gi:32975308
TID=Os.11754.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11754 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002N01, full insert sequence.
FL= gb:AK065290.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3517011/11oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed
LOC_Os02g35144Os.23148.1.A1_at10/112+21098833..21102186Zinc finger, C3HC4 type family protein, expressed
LOC_Os02g35150Os.49867.1.S1_at11/112+21104860..21109970Zinc finger C-x8-C-x5-C-x3-H type family protein, expressed
LOC_Os02g35160Os.23846.1.A1_s_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35160Os.25492.1.S1_at11/112+21110059..21116258eukaryotic translation initiation factor SUI1 family protein, putative, expressed
LOC_Os02g35170Os.11754.1.A1_at11/112+21116431..21119266oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os02g35180Os.23942.1.A1_at11/112+21122770..21125500response regulator 7, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016491molecular_functionoxidoreductase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11754.1.A1_at--747--6071Chr02:21118679..21118703 (25 bp)
GAGTATCCAGTTGACCACATCTAAA
LOC_Os02g35170
Os.11754.1.A1_at--12--7411Chr02:21118717..21118741 (25 bp)
GTGATCTTTTTCTTTAGTGCTACAT
LOC_Os02g35170
Os.11754.1.A1_at--1037--2851Chr02:21118796..21118820 (25 bp)
AAGTGCCATAGCTGTGGCTCACTAA
LOC_Os02g35170
Os.11754.1.A1_at--610--6631Chr02:21118866..21118890 (25 bp)
GTTGTTGGCAACACTAGCTTTTGTA
LOC_Os02g35170
Os.11754.1.A1_at--472--9151Chr02:21118910..21118934 (25 bp)
TGCGACATTGATCCCATTAACCAGA
LOC_Os02g35170
Os.11754.1.A1_at--952--10491Chr02:21118926..21118950 (25 bp)
TTAACCAGATGATGCCTTCTCTTTC
LOC_Os02g35170
Os.11754.1.A1_at--824--3731Chr02:21118996..21119020 (25 bp)
CTAAGCCTTGGCCTAGACGACAATG
LOC_Os02g35170
Os.11754.1.A1_at--215--531Chr02:21119025..21119049 (25 bp)
ATCGCTCACCGTATGATGCTGTAGC
LOC_Os02g35170
Os.11754.1.A1_at--52--2971Chr02:21119153..21119177 (25 bp)
AATGGCTGTAGCTGTGCGTACTGCT
LOC_Os02g35170
Os.11754.1.A1_at--731--8571Chr02:21119177..21119201 (25 bp)
TGGTTCGCTATCTCACAGTGATTCT
LOC_Os02g35170
Os.11754.1.A1_at--127--6931Chr02:21119240..21119264 (25 bp)
GTATGGATGGCACGCGTTATTTCTC
LOC_Os02g35170
Target Sequence 
GAGTATCCAGTTGACCACATCTAAAAGCTGTCTTACATGTGATCTTTTTCTTTAGTGCTACATTGATACATTTTTATTGC
TTCTTAATGCAACCGACATGAACAGGGAACCTTGAATAAGTGCCATAGCTGTGGCTCACTAATATAACTGTCATATGATC
CATGACAGCTTGAAATATAAGTGTGAAGTTGTTGGCAACACTAGCTTTTGTATGCAATAACTTTCAGGATATGCGACATT
GATCCCATTAACCAGATGATGCCTTCTCTTTCTTCTCTTTATTTTTTTTCAGGGCNCCCAAGGCAGCTNCGATGATACTA
AGCCTTGGCCTAGACGACAATGGCTCATCGCTCACCGTATGATGCTGTAGCAAATCTATATGCCGAACTAATCTNTGATG
TATTGAGTTGTAGTCCTTAACTTTGAACTGTTGTGCAACATTATGTTGTAGTTAGATCGAATCGACAGTGCGCTAATGGC
TGTAGCTGTGCGTACTGCTGGTTCGCTATCTCACAGTGATTCTGTACCGTATATNNNTGATGATGATGATGAAACTGTGA
ATGNGTATGGATGGCACGCGTTATTTCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11754.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis