Browse Element(s) Details


Os.10211.1.S1_at

Description gb:AK063478.1
DB_XREF= gi:32973496
TID=Os.10211.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.10211 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-116-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-116-B05, full insert sequence.
FL= gb:AK063478.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3511011/11tubulin folding cofactor C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35140Os.21860.1.S1_at11/112+21092322..21098164Auxin response factor 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000910biological_processcytokinesis
GO:0007021biological_processtubulin folding
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.10211.1.S1_at--1023--7151Chr02:21068724..21068748 (25 bp)
GTCTCCTGTCAGGTTTACCTCAAGG
LOC_Os02g35110
Os.10211.1.S1_at--519--9731Chr02:21068743..21068767 (25 bp)
TCAAGGGCAAATGCCGGGCGCTGCA
LOC_Os02g35110
Os.10211.1.S1_at--788--8391Chr02:21068759..21068783 (25 bp)
GGCGCTGCACGTTCACAAGCTGAAG
LOC_Os02g35110
Os.10211.1.S1_at--919--3231Chr02:21068774..21068798 (25 bp)
CAAGCTGAAGGATTGCCGCGTGTTC
LOC_Os02g35110
Os.10211.1.S1_at--973--6711Chr02:21068810..21068834 (25 bp)
GTTCGGCTCGGTGCTCATAGAGGAC
LOC_Os02g35110
Os.10211.1.S1_at--13--411Chr02:21068871..21068895 (25 bp)
ATCAGGATCCACGAGGCGACAGCGA
LOC_Os02g35110
Os.10211.1.S1_at--1133--5631Chr02:21068888..21068912 (25 bp)
GACAGCGACGGATTTCTACCTGAGG
LOC_Os02g35110
Os.10211.1.S1_at--712--10491Chr02:21069052..21069076 (25 bp)
TTAAGTGGCTCAGGGCAGTGCAGTC
LOC_Os02g35110
Os.10211.1.S1_at--1134--3451Chr02:21069067..21069091 (25 bp)
CAGTGCAGTCGCCAAATTGGTGTTT
LOC_Os02g35110
Os.10211.1.S1_at--410--5891Chr02:21069105..21069129 (25 bp)
GAGCGGTTGCAGACCATTGACATTT
LOC_Os02g35110
Os.10211.1.S1_at--377--6851Chr02:21069175..21069199 (25 bp)
GTTTGCTTTCGGCTCTTATTATGGA
LOC_Os02g35110
Target Sequence 
GTCTCCTGTCAGGTTTACCTCAAGGGCAAATGCCGGGCGCTGCACGTTCACAAGCTGAAGGATTGCCGCGTGTTCGTGGG
CGCCGTGTTCGGCTCGGTGCTCATAGAGGACGTCGAGCNCTGCGCATTCNGTGATGNCGGCGCACCAGATCAGGATCCAC
GAGGCGACAGCGACGGATTTCTACCTGAGGNTGAGGAGCNAGNCCGATCATTGAGGATTGCTNCGGCNTGAGGTTCGCGC
CGCATGCTCTCAAGTATGAAGGGATTGGGGAGGATTTGAGGGATGCGGGGCTCGAGGAGGAGACCGGTAATTGGGCGAAT
GTTGATGACTTTAAGTGGCTCAGGGCAGTGCAGTCGCCAAATTGGTGTTTGGTTCCGGAGGAAGAGCGGTTGCAGACCAT
TGACATTTCAGATGTTCAGGAACGAGAGTATGATAATTAAGATGCTTGGGATGGTTTGCTTTCGGCTCTTATTATGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.10211.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis