Browse Element(s) Details


Os.17120.1.S1_at

Description gb:AK066206.1
DB_XREF= gi:32976224
TID=Os.17120.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.17120 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013056D20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013056D20, full insert sequence.
FL= gb:AK066206.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3507011/11SPRY domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17120.1.S1_at--115--5031Chr02:21038535..21038559 (25 bp)
GCAGTGAATGCAGCTGTCCTGTCAA
LOC_Os02g35070
Os.17120.1.S1_at--424--6691Chr02:21038483..21038507 (25 bp)
GTTGCCTTTACTCATGTCTCGAGAA
LOC_Os02g35070
Os.17120.1.S1_at--1127--8251Chr02:21038450..21038474 (25 bp)
GGCAGCTCACAGTATGCAGCTTCGA
LOC_Os02g35070
Os.17120.1.S1_at--206--1651Chr02:21038426..21038450 (25 bp)
AGCGACGTGCATTCAGCGGAGACCA
LOC_Os02g35070
Os.17120.1.S1_at--467--1291Chr02:21038358..21038382 (25 bp)
AGATCCAGGTGTTCCTAGGCATCAA
LOC_Os02g35070
Os.17120.1.S1_at--963--5631Chr02:21038288..21038312 (25 bp)
GACTTTGTGCCCCTCTTGGAAGGAA
LOC_Os02g35070
Os.17120.1.S1_at--1030--5331Chr02:21038197..21038221 (25 bp)
GAAGTTTCGCAGTATACTCTCCACA
LOC_Os02g35070
Os.17120.1.S1_at--530--7771Chr02:21038171..21038195 (25 bp)
GGTGAACGCCTAACTGCTGGGAAAT
LOC_Os02g35070
Os.17120.1.S1_at--425--8631Chr02:21038154..21038178 (25 bp)
TGGGAAATTTGGCAGCAGCTCCTTC
LOC_Os02g35070
Os.17120.1.S1_at--268--4791Chr02:21038137..21038161 (25 bp)
GCTCCTTCCCTGTAATCTGAAAACT
LOC_Os02g35070
Os.17120.1.S1_at--1064--3031Chr02:21037998..21038022 (25 bp)
AATCGAGTTGCCCTTTAACCTTGTG
LOC_Os02g35070
Target Sequence 
GCAGTGAATGCAGCTGTCCTGTCAACGAACCCGAACATGAAGGACCCTGAGAGTTGCCTTTACTCATGTCTCGAGAAACT
ACTGAGGCAGCTCACAGTATGCAGCTTCGAGCGACGTGCATTCAGCGGAGACCAAGGGGATGCATTCTTACTACATAAAG
AAGTGCAGTCCTGCGATAGATCCAGGTGTTCCTAGGCATCAAAGCATTCAAGTTGCACCTGCATCTGAGCAGTGAACTCA
GAGATGAGACTTTGTGCCCCTCTTGGAAGGAAAGGGATTCACCTCGGAGCGGAGATGTAGACCATGATCCATGCGCAATC
ACAGATACTTTGATTCTTGAAGTTTCGCAGTATACTCTCCACAAGGTGAACGCCTAACTGCTGGGAAATTTGGCAGCAGC
TCCTTCCCTGTAATCTGAAAACTTACATTCACACATGGCCTTAAACATCTCTGTTTCCATAAACTCGGAAGCTTTGAGCT
GGTAGACATTCTGAATGTGAAATGAGAAGAGAAAAACAATAAGATTTGTGTAAATGAAATCGAGTTGCCCTTTAACCTTG
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17120.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis