Browse Element(s) Details


OsAffx.24583.1.S1_at

Description tigr:9630.m03342
TID=OsAffx.24583.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3506011/11RNA methylase family UPF0020 containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35020OsAffx.24582.1.S1_at11/112+21008921..21012083glycogenin-like starch initiation protein, putative, expressed
LOC_Os02g35039Os.9639.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039OsAffx.12357.1.S1_at11/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35039Os.57570.1.S1_at1/112+21021861..21032924NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24583.1.S1_at--142--9311Chr02:21035130..21035154 (25 bp)
TCCCACCTTGGCGTCCAGGATTGAA
LOC_Os02g35060
OsAffx.24583.1.S1_at--872--2911Chr02:21034608..21034628 (21 bp)
AAGGAGGTTTTCGATGCCATCATCT
LOC_Os02g35060
OsAffx.24583.1.S1_at--19--9611Chr02:21034589..21034613 (25 bp)
TCATCTGTGATCCACCATACGGAGT
LOC_Os02g35060
OsAffx.24583.1.S1_at--202--5411Chr02:21034534..21034558 (25 bp)
GAAGCTCATAAAGGGCACCGTCGCT
LOC_Os02g35060
OsAffx.24583.1.S1_at--102--9271Chr02:21034510..21034534 (25 bp)
TCCGTACACGGTTCCGGACGAGAAG
LOC_Os02g35060
OsAffx.24583.1.S1_at--688--1451Chr02:21034490..21034514 (25 bp)
AGAAGAGGGACAGCCACATCCCATC
LOC_Os02g35060
OsAffx.24583.1.S1_at--298--10691Chr02:21034304..21034328 (25 bp)
TTGCCTCCTGCGAGCAGATCCTGAG
LOC_Os02g35060
OsAffx.24583.1.S1_at--361--8911Chr02:21034283..21034307 (25 bp)
TGAGCATGAGGTACAGCCGGGTCCT
LOC_Os02g35060
OsAffx.24583.1.S1_at--78--1731Chr02:21034254..21034278 (25 bp)
ACCATGGTGAAGGTCGGGCCCTACA
LOC_Os02g35060
OsAffx.24583.1.S1_at--524--4151Chr02:21034194..21034218 (25 bp)
CGCGAGTTCAGGGAGAACCACCATA
LOC_Os02g35060
OsAffx.24583.1.S1_at--551--5411Chr02:21034096..21034120 (25 bp)
GAAGCCGGCCATAGACAGGGACTCC
LOC_Os02g35060
Target Sequence 
TCCCACCTTGGCGTCCAGGATTGAAGGAGGTTTTCGATGCCATCATCTGTGATCCACCATACGGAGTCCGGGCTGGAGGC
CGCAAGTCCGGTGGCCGGAAGCTCATAAAGGGCACCGTCGCTCCGTACACGGTTCCGGACGAGAAGAGGGACAGCCACAT
CCCATCCACCGCGCCGTACAGCCTCGCGGAGTGCGTCCACGACCTCCTCCACCTCGCCGCGAGGATGCTGGTCATGGGTG
GCCGGCTGGTCTTCTTCTTCCCCGTCGTCCGCGAGGACGGCGTCGCCAACCCGGCCAAGTACCCGGAGCACCCCTGCTTC
AGGCTGCTTGCCTCCTGCGAGCAGATCCTGAGCATGAGGTACAGCCGGGTCCTGCTGACCATGGTGAAGGTCGGGCCCTA
CACCGAGGAGGTCGAGAAGGCGGCGGAGGAGCGGCGCCGCGAGTTCAGGGAGAACCACCATAAGTGGATGGAGGAGGGGA
ACCTCCACTCCGCCGTGTTCAGCCCCGCCGATCAGGCCGCCGCCGCCGCCGACGGGAAGCCGGCCATAGACAGGGACTCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24583.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis