Browse Element(s) Details


Os.24275.1.S2_at

Description gb:AK067393.1
DB_XREF= gi:32977411
TID=Os.24275.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.24275 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013106B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013106B07, full insert sequence.
FL= gb:AK063555.1 gb:AK067393.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3510011/11DDT domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g35060OsAffx.24583.1.S1_at11/112+21033759..21036768RNA methylase family UPF0020 containing protein, putative, expressed
LOC_Os02g35070Os.17120.1.S1_at11/112+21037966..21044468SPRY domain containing protein, expressed
LOC_Os02g35080Os.7797.1.S1_at11/112+21048583..21054521T-complex protein 11 containing protein, expressed
LOC_Os02g35090Os.53808.1.S1_x_at11/112+21053532..21055687expressed protein
LOC_Os02g35100Os.24275.1.S2_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35100Os.24275.1.S1_at11/112+21058269..21063148DDT domain containing protein, expressed
LOC_Os02g35110Os.10211.1.S1_at11/112+21068099..21069316tubulin folding cofactor C, putative, expressed
LOC_Os02g35120OsAffx.21756.3.S1_x_at2/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.2.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35120OsAffx.21756.4.S1_x_at1/112+21074308..21075013transposon protein, putative, unclassified, expressed
LOC_Os02g35130Os.7291.1.S1_at11/112+21076774..21082494AIG1 family protein, expressed
LOC_Os02g35130Os.48518.1.S1_at1/112+21076774..21082494AIG1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.24275.1.S2_at--87--4811Chr02:21059243..21059267 (25 bp)
GCTCTCAAACGGCAGCTGGACAAGT
LOC_Os02g35100
Os.24275.1.S2_at--684--8991Chr02:21058733..21058757 (25 bp)
TGAAGAGGCTGTATTGCGCCGTTCC
LOC_Os02g35100
Os.24275.1.S2_at--550--8711Chr02:21058703..21058727 (25 bp)
TGTCCGGGCTCAACCAAGGGATAAC
LOC_Os02g35100
Os.24275.1.S2_at--318--6471Chr02:21058684..21058708 (25 bp)
GATAACCCATCCATGTCATTCCTGA
LOC_Os02g35100
Os.24275.1.S2_at--1095--4851Chr02:21058590..21058614 (25 bp)
GCTAGCTACTCGATGACAGGGTTTT
LOC_Os02g35100
Os.24275.1.S2_at--44--8351Chr02:21058501..21058525 (25 bp)
GGCTGTTCTTTGAGCAATCATCACT
LOC_Os02g35100
Os.24275.1.S2_at--157--8811Chr02:21058455..21058479 (25 bp)
TGTTGGTTTACAGCCTTACACTGGA
LOC_Os02g35100
Os.24275.1.S2_at--865--10471Chr02:21058440..21058464 (25 bp)
TTACACTGGACTGATAGAGCGCTAC
LOC_Os02g35100
Os.24275.1.S2_at--197--1371Chr02:21058425..21058449 (25 bp)
AGAGCGCTACCAGAGCTAGTTTTTG
LOC_Os02g35100
Os.24275.1.S2_at--175--1971Chr02:21058329..21058353 (25 bp)
ACTGATATGCTGCTGATGTTATGCC
LOC_Os02g35100
Os.24275.1.S2_at--307--4491Chr02:21058307..21058331 (25 bp)
GCCGGTTTTGGATTTATCAGTCGCA
LOC_Os02g35100
Target Sequence 
GCTCTCAAACGGCAGCTGGACAAGTTGTACAGTAAGATAAGTAATGCTNCTGGAGAANCGATCAAAAGAAATCNCNCNCA
AATTGTTGCTTGAAGAGGCTGTATTGCGCCGTTCCNCACGTGTCCGGGCTCAACCAAGGGATAACCCATCCATGTCATTC
CTGAAGTATGTCAACAAATGGAAGGATAACTAAGTAGCCAAGAGGACAGCTTGTCCGCAGGTGGGGGAACTGAGCTAGCT
ACTCGATGACAGGGTTTTGTTTTCAGAGGAACATATATGAAGGTCTGATGAGGTGGTATGTTATTTGTTAGCCAATCCTC
ATGGCTGTTCTTTGAGCAATCATCACTAGGTAGCAAAACCNATTAACCTGTTGGTTTACAGCCTTACACTGGACTGATAG
AGCGCTACCAGAGCTAGTTTTTGGAGCTATATACCCAGTGTAACTTATCTTACATGTAAACATGGTATTAGCCTCAGGAA
CCATGAGTTGCTAAACTGATATGCTGCTGATGTTATGCCGGTTTTGGATTTATCAGTCGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.24275.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis