Browse Element(s) Details


Os.9443.1.S1_at

Description gb:C91879
DB_XREF= gi:3061247
DB_XREF=C91879
CLONE=E61322_1A
TID=Os.9443.1
CNT=6
FEA=mRNA
TIER=ConsEnd
STK=0
UG=Os.9443 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains ESTs AU063006(C52317),AU085751(C52317)~similar to Oryza sativa chromosome7, OJ1567_G09.19~unknown protein (OJ1123_C12.12), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0203011/11Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01960OsAffx.16037.2.S1_at11/117+585901..586437hypothetical protein
LOC_Os07g01960OsAffx.16037.2.S1_s_at11/117+585901..586437hypothetical protein
LOC_Os07g01970OsAffx.22516.1.S1_at11/117+586973..587809retrotransposon protein, putative, unclassified
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0001666biological_processresponse to hypoxia
GO:0004737molecular_functionpyruvate decarboxylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9443.1.S1_at--733--9512Chr07:730690..730713 (24 bp)
TCTCAACAGGCACAACCACGAGGTT
NONE
Os.9443.1.S1_at--338--7911Chr07:615274..615298 (25 bp)
GGTTGATGCGTTGCTCGAGGAAATC
LOC_Os07g02030
Os.9443.1.S1_at--1160--3971Chr07:615289..615313 (25 bp)
CGAGGAAATCAAGAATACGCCGGTT
LOC_Os07g02030
Os.9443.1.S1_at--773--5232Chr07:732835..732859 (25 bp)
GAATACGCCGGTTAGCATGATTTCC
NONE
Os.9443.1.S1_at--892--6791Chr07:615383..615407 (25 bp)
GTTATTATTTGTTGTGTGTCTTGTT
LOC_Os07g02030
Os.9443.1.S1_at--432--10591Chr07:615497..615521 (25 bp)
TTCTCCGATCATGGGTTATTGCTGC
LOC_Os07g02030
Os.9443.1.S1_at--645--8671Chr07:615688..615712 (25 bp)
TGTGTCATAATCTATCCTGTGTATC
LOC_Os07g02030
Os.9443.1.S1_at--751--7351Chr07:615714..615738 (25 bp)
GTGACTCTGTGTTAACTATAACTAA
LOC_Os07g02030
Os.9443.1.S1_at--162--10071Chr07:615740..615764 (25 bp)
TAGTCCTAGAGCTAATTGGTGTGGG
LOC_Os07g02030
Os.9443.1.S1_at--254--8911Chr07:615775..615799 (25 bp)
TGAGAGATCTCGTTCGGTTTGACCT
LOC_Os07g02030
Os.9443.1.S1_at--359--3771Chr07:615783..615807 (25 bp)
CTCGTTCGGTTTGACCTGTACATGT
LOC_Os07g02030
Target Sequence 
TCTCAACAGGCACAACCACGAGGTTGATGCGTTGCTCGAGGAAATCAAGAATACGCCGGTTAGCATGATTTCCNGATGAC
TTAATTATCAGAACTGTNCGGCAGTACGTAAACCTCTGNAATTNCNGCTTCTGTTATTATTTGTTGTGTGTCTTGTTANA
CCNATCCTAAATTGATAATTACTATTACCTGTCCTTGTCTGNCTTCTCTNAGTTCTATTTTGGCTCGTCANCAGATTCTT
GTTCNAAATGTTCTCCGATCATGGGTTATTGCTGCANCAGTTCTCTCAGGCTATTNCTGGGGGTACANACAGAGTGGCCN
AACGTCCTGTGNCTGGCTCTGAACCNCCNACNNGAAGATGAGGTGTAGAGGACTTGACNNGTGNTTTTCTTTTGGAGATG
GGAGTCTAGAAGTCTGGGAGAATCNAGAACNGTAGTGAANCTAAGCANTGTGTCATAATCTATCCTGTGTATCNNGTGAC
TCTGTGTTAACTATAACTAATTAGTCCTAGAGCTAATTGGTGTGGGGATTCTGTAATGAGAGATCTCGTTCGGTTTGACC
TGTACATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9443.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis