Browse Element(s) Details


OsAffx.28227.1.S1_x_at

Description tigr:9635.m00108
TID=OsAffx.28227.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g0204010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g01990OsAffx.16038.1.S1_s_at11/117+602885..605785expressed protein
LOC_Os07g01990Os.18016.1.S1_at11/117+602885..605785expressed protein
LOC_Os07g02000Os.7514.1.S1_at11/117+605984..606947expressed protein
LOC_Os07g02030OsAffx.10277.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030OsAffx.10277.1.S1_x_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02030Os.9443.1.S1_at11/117+610802..617711Thiamine pyrophosphate enzyme, N-terminal TPP binding domain containing protein, expressed
LOC_Os07g02040OsAffx.28227.1.S1_x_at10/117+621772..622759hypothetical protein
LOC_Os07g02040Os.50959.1.S1_at1/117+621772..622759hypothetical protein
LOC_Os07g02050NANA7+626147..626607retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g02060Os.38985.1.S1_at11/117+628861..632615WRKY DNA binding domain containing protein, expressed
LOC_Os07g02070Os.47130.4.A1_x_at5/117+644519..646561retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28227.1.S1_x_at--494--4391NONE
GCCAATCCAGTGAAGTCACTCTCAA
NONE
OsAffx.28227.1.S1_x_at--367--1031Chr07:622056..622541 (25 bp)
AGTGAAGTCACTCTCAACCCTATAT
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--343--2851Chr07:622052..622075 (24 bp)
AAGTCACTCTCAACCCTATATCTCT
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--579--2611Chr07:622041..622065 (25 bp)
AACCCTATATCTCTCAGCGCCGGTG
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--24--2151Chr07:622015..622039 (25 bp)
ACAGACGGCGGCAGCAGCTACTCCG
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--508--8251Chr07:622006..622030 (25 bp)
GGCAGCAGCTACTCCGTGCGGAAGG
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--433--1071Chr07:621981..622005 (25 bp)
AGGGAGGCGCAGGTGCTCGCCACCA
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--266--2911Chr07:621901..621925 (25 bp)
AAGGAGGCGCGTGGCACGGGAGCTC
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--134--7791Chr07:621863..621887 (25 bp)
GGTGCGAAGGGAGGCGCGCGACACA
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--1084--3331Chr07:621826..621850 (25 bp)
CACTGGCCGCGGAAGGAGGCATGCA
LOC_Os07g02040
OsAffx.28227.1.S1_x_at--456--4991Chr07:621808..621832 (25 bp)
GCATGCAGCGCAGGTCGAGGATGGC
LOC_Os07g02040
Target Sequence 
GCCAATCCAGTGAAGTCACTCTCAACCCTATATCTCTCAGCGCCGGTGCACAGACGGCGGCAGCAGCTACTCCGTGCGGA
AGGAGGGAGGCGCAGGTGCTCGCCACCACCGCGGGGTGCGAAGAGAGGCGCGTGGCGTGGGAGCCCGCCGCCGCTGGGCG
CGGAAGGAGGCGCGTGGCACGGGAGCTCGCGGCCGCGGCGGGGTGCGAAGGGAGGCGCGCGACACAGGAGCCCGCCGCCA
CTGGCCGCGGAAGGAGGCATGCAGCGCAGGTCGAGGATGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28227.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis