Browse Element(s) Details


Os.9495.1.S1_at

Description gb:AY062183.1
DB_XREF= gi:37542677
GEN=LEC1A
TID=Os.9495.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9495 (NCBI UniGene Cluster)
DEF=Oryza sativa HAP3 transcriptional-activator (LEC1A) mRNA, complete cds.
PROD=HAP3 transcriptional-activator
FL= gb:AY062183.1 gb:AK109660.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g1748011/11Histone-like transcription factor and archaeal histone family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g17440Os.12142.1.S1_at11/116+10119999..10123401TMV-MP30 binding protein 2C, putative, expressed
LOC_Os06g17450OsAffx.15474.1.S1_s_at11/116+10125760..10126396expressed protein
LOC_Os06g17460OsAffx.15475.1.S1_at11/116+10130034..10130805Fasciclin domain containing protein
LOC_Os06g17470OsAffx.27686.1.S1_at11/116+10134169..10134609hypothetical protein
LOC_Os06g17480Os.9495.1.S1_at11/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17480OsAffx.23994.1.S1_x_at1/116+10136824..10137874Histone-like transcription factor and archaeal histone family protein, expressed
LOC_Os06g17490Os.52453.1.S1_at11/116+10145844..10148403Protein kinase domain containing protein, expressed
LOC_Os06g17500Os.37806.1.S1_at11/116+10148827..10151293expressed protein
LOC_Os06g17510OsAffx.15476.1.S1_at10/116+10154244..10155769hypothetical protein
LOC_Os06g17520Os.45173.1.S1_x_at2/116+10157496..10164259retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0045449biological_processregulation of transcription
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9495.1.S1_at--79--6711Chr06:10137298..10137322 (25 bp)
GTTCCGCTACGTGCAGGTCCATCAT
LOC_Os06g17480
Os.9495.1.S1_at--1098--3911Chr06:10137464..10137488 (25 bp)
CTGGCTGTCTACTACGGAGGAGCGC
LOC_Os06g17480
Os.9495.1.S1_at--418--4491Chr06:10137565..10137589 (25 bp)
GCCGGTCGGCCCCAACTATGAGTAA
LOC_Os06g17480
Os.9495.1.S1_at--612--1411Chr06:10137603..10137627 (25 bp)
AGAAAATCAAACTCTTCCCCGGCTG
LOC_Os06g17480
Os.9495.1.S1_at--803--4251Chr06:10137621..10137645 (25 bp)
CCGGCTGACAGGTGATCGAGCTCGT
LOC_Os06g17480
Os.9495.1.S1_at--259--5911Chr06:10137638..10137662 (25 bp)
GAGCTCGTCGTCTACAAATTATCAA
LOC_Os06g17480
Os.9495.1.S1_at--984--3131Chr06:10137654..10137678 (25 bp)
AATTATCAATCGTCTGTCGATCGAT
LOC_Os06g17480
Os.9495.1.S1_at--446--1411Chr06:10137726..10137750 (25 bp)
AGACATGTTCTGTTCATCTTTCCGC
LOC_Os06g17480
Os.9495.1.S1_at--213--4171Chr06:10137748..10137772 (25 bp)
CGCCACCGTTTCATCGAAAGAGATT
LOC_Os06g17480
Os.9495.1.S1_at--159--4871Chr06:10137788..10137812 (25 bp)
GCTAGAAATCATTTCGAGCTCGAAT
LOC_Os06g17480
Os.9495.1.S1_at--802--5891Chr06:10137803..10137827 (25 bp)
GAGCTCGAATTACTTAATCGTGTTG
LOC_Os06g17480
Target Sequence 
GTTCCGCTACGTGCAGGTCCATCATCCCGTGTACGCGGCGCCAGGTGAGCCGGTGCAGGGGTACGGTTACCCCGTGGCCA
TGTCGTCTGCTCTGCCGGCGCCGCACGTGCACGTCGGCGTCCGCGGCGGCGGGCAGCACGAGGTGTTCGGTGGCGGGCCG
GCGCCCCTGGCTGTCTACTACGGAGGAGCGCCGTACGGCGAGGCCAGCAGCCGCGGCGGCTGCTCTGCCGCCGACGAGGG
GAGCTCGTCGTCGAGCGCCTCGCCGGCGCCGGTCGGCCCCAACTATGAGTAAAAACAAAAGAAGAAGAAAATCAAACTCT
TCCCCGGCTGACAGGTGATCGAGCTCGTCGTCTACAAATTATCAATCGTCTGTCGATCGATTAGCATGTAATCTAATAAA
AAAACTTAAGCTAGCTTAAGACTTAATTAGACATGTTCTGTTCATCTTTCCGCCACCGTTTCATCGAAAGAGATTAAGAA
TGTGGTAGTAGCTAGAAATCATTTCGAGCTCGAATTACTTAATCGTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9495.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis