Browse Element(s) Details


Os.9585.1.S1_s_at

Description gb:AB060552.1
DB_XREF= gi:15991281
GEN=OsCAM-2
TID=Os.9585.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9585 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) OsCAM-2 mRNA for Calmodulin-2, complete cds.
PROD=Calmodulin-2
FL= gb:AB060552.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4111011/11Calmodulin, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41080NANA12+25400530..25404876retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g41090OsAffx.20067.1.S1_s_at11/1112+25411151..25412669Protein kinase domain containing protein, expressed
LOC_Os12g41100NANA12+25423105..25424464transposon protein, putative, unclassified
LOC_Os12g41110Os.9585.1.S1_s_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41110Os.9585.1.S1_at11/1112+25429011..25429896Calmodulin, putative, expressed
LOC_Os12g41120OsAffx.7851.1.S1_at11/1112+25432148..25432603hypothetical protein
LOC_Os12g41130OsAffx.1705.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41130Os.27131.1.S1_at1/1112+25449767..25450808hypothetical protein
LOC_Os12g41140Os.7037.1.A1_s_at7/1112+25454030..25460115expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005513biological_processdetection of calcium ion
GO:0009612biological_processresponse to mechanical stimulus
GO:0019722biological_processcalcium-mediated signaling
GO:0004871molecular_functionsignal transducer activity
GO:0005509molecular_functioncalcium ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9585.1.S1_s_at--881--3171Chr12:25429600..25429624 (25 bp)
CAATAATTAATCTCCTCTCTACTAT
LOC_Os12g41110
Os.9585.1.S1_s_at--279--9751Chr12:25429607..25429631 (25 bp)
TAATCTCCTCTCTACTATATATCCA
LOC_Os12g41110
Os.9585.1.S1_s_at--950--4371Chr12:25429629..25429653 (25 bp)
CCAAAATCAATATATCTCTCTCCAT
LOC_Os12g41110
Os.9585.1.S1_s_at--8--9751Chr12:25429635..25429659 (25 bp)
TCAATATATCTCTCTCCATTTCATT
LOC_Os12g41110
Os.9585.1.S1_s_at--103--4871Chr12:25429729..25429753 (25 bp)
GCTAGCTATAGCTACTGTCATTTAA
LOC_Os12g41110
Os.9585.1.S1_s_at--595--4851Chr12:25429739..25429763 (25 bp)
GCTACTGTCATTTAATTTGGCCTTG
LOC_Os12g41110
Os.9585.1.S1_s_at--1134--3851Chr12:25429743..25429767 (25 bp)
CTGTCATTTAATTTGGCCTTGGTTA
LOC_Os12g41110
Os.9585.1.S1_s_at--501--7131Chr12:25429745..25429769 (25 bp)
GTCATTTAATTTGGCCTTGGTTAAT
LOC_Os12g41110
Os.9585.1.S1_s_at--929--10031Chr12:25429770..25429794 (25 bp)
TAGTTCCTTGATTAATGTATTTGTT
LOC_Os12g41110
Os.9585.1.S1_s_at--531--10131Chr12:25429797..25429821 (25 bp)
TATGACCAAATCATACATACATGTA
LOC_Os12g41110
Os.9585.1.S1_s_at--572--751Chr12:25429817..25429841 (25 bp)
ATGTATGTCCATTAATTTTTGCATG
LOC_Os12g41110
Target Sequence 
CAATAATTAATCTCCTCTCTACTATATATCCAAAATCAATATATCTCTCTCCATTTCATTTTGTTTTTTTTCGATCTCTT
CTTTCTTTCTTTCTTCCCAATTTGATTAGTTACCTAACTAATTAAGGTAGCTAGCTATAGCTACTGTCATTTAATTTGGC
CTTGGTTAATTAGTTCCTTGATTAATGTATTTGTTTGTATGACCAAATCATACATACATGTATGTCCATTAATTTTTGCA
TG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9585.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis