Browse Element(s) Details


Os.9596.1.S1_at

Description gb:AK072402.1
DB_XREF= gi:32982425
TID=Os.9596.1
CNT=10
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9596 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023079J03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023079J03, full insert sequence.
FL= gb:AK072402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5118010/11Cullin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed
LOC_Os02g51190OsAffx.29536.5.S1_x_at1/112+31316985..31319277transposon protein, putative, unclassified
LOC_Os02g51200NANA2+31322377..31328273retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007049biological_processcell cycle
GO:0009639biological_processresponse to red or far red light
GO:0009733biological_processresponse to auxin stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009911biological_processpositive regulation of flower development
GO:0009960biological_processendosperm development
GO:0000151cellular_componentubiquitin ligase complex
GO:0000794cellular_componentcondensed nuclear chromosome
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005819cellular_componentspindle
GO:0009524cellular_componentphragmoplast
GO:0019005cellular_componentSCF ubiquitin ligase complex
GO:0004842molecular_functionubiquitin-protein ligase activity
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9596.1.S1_at--577--6171Chr02:31304428..31304452 (25 bp)
GAGGATGACACATTCTACTTCAACG
LOC_Os02g51180
Os.9596.1.S1_at--722--10771Chr02:31304286..31304310 (25 bp)
TTGAGGCTGCTATCGTCAGGATTAT
LOC_Os02g51180
Os.9596.1.S1_at--217--3231Chr02:31304213..31304237 (25 bp)
CAAGCAATTGCAAGCCCGATTCATG
LOC_Os02g51180
Os.9596.1.S1_at--815--111Chr02:31304195..31304219 (25 bp)
ATTCATGCCGAATCCTGTTGTCATA
LOC_Os02g51180
Os.9596.1.S1_at--452--1931Chr02:31304037..31304061 (25 bp)
ACGGTTTCCATGACGTTTGAGTTCA
LOC_Os02g51180
Os.9596.1.S1_at--22--10771Chr02:31304021..31304045 (25 bp)
TTGAGTTCAGTTTTATTCGTTCCAC
LOC_Os02g51180
Os.9596.1.S1_at--438--6691Chr02:31304003..31304027 (25 bp)
GTTCCACTTTGTCCACTGAATCATA
LOC_Os02g51180
Os.9596.1.S1_at--685--10291Chr02:31303967..31303991 (25 bp)
TTTCCCGTAGGCAAGCTGGTGTTCA
LOC_Os02g51180
Os.9596.1.S1_at--99--7751Chr02:31303950..31303974 (25 bp)
GGTGTTCAGAGTTTTCCAGCTAATA
LOC_Os02g51180
Os.9596.1.S1_at--227--7131Chr02:31303920..31303944 (25 bp)
GTCATGTTACGAGTTGCTGCTATCT
LOC_Os02g51180
Os.9596.1.S1_at--790--6011Chr02:31303885..31303909 (25 bp)
GAGATGGATCGTCAAATTCACAGCC
NONE
Target Sequence 
GAGGATGACACATTCTACTTCAACGACAAGTTCACAAGCAAGCTTGTTAAGGTCAAGATTGGGACAGTAGTGGCGCAAAA
GGAATCTGAGCCAGAGAAACAAGAGACTCGTCAACGGGTTGAGGAGGACAGGAAACCTCAAATTGAGGCTGCTATCGTCA
GGATTATGAAATCCAGGAGGGTCTTGGATCATAACAGCATTGTAGCTGAGGTTACCAAGCAATTGCAAGCCCGATTCATG
CCGAATCCTGTTGTCATAAAGAAACGCATAGAATCTCTAATTGAGCGTGAATTCTTAGAGAGGGACAAAGCAGATAGGAA
GTTATATCGCTATCTTGCATAGAAGGTCATTATGTGATTATTGATGAGCAAANGGCTTGTATTCATGTAAAACGGTTTCC
ATGACGTTTGAGTTCAGTTTTATTCGTTCCACTTTGTCCACTGAATCATAGCTACTTCTCGTTTCCCGTAGGCAAGCTGG
TGTTCAGAGTTTTCCAGCTAATACTGATGTCATGTTACGAGTTGCTGCTATCTTAATATAATGGAGATGGATCGTCAAAT
TCACAGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9596.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis