Browse Element(s) Details


Os.9614.1.S1_at

Description gb:AK072646.1
DB_XREF= gi:32982669
TID=Os.9614.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9614 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023131C20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023129P11, full insert sequence.
FL= gb:AK072646.1 gb:AK100898.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0403011/11Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03990OsAffx.2499.1.S1_at11/112+1723476..1727642transducin family protein, putative
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os02g04030Os.9614.1.S1_at11/112+1748459..1753225Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed
LOC_Os02g04040Os.21109.1.S1_at5/112+1754861..1757771SMC family, C-terminal domain containing protein, expressed
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
GO:0005215molecular_functiontransporter activity
GO:0008526molecular_functionphosphatidylinositol transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9614.1.S1_at--287--6991Chr02:1749585..1749609 (25 bp)
GTACGAAGCGCTGATCAAGCGGCTC
LOC_Os02g04030
Os.9614.1.S1_at--308--991Chr02:1749499..1749523 (25 bp)
AGGAGGACTTGCTCAAAGCCGCCGT
LOC_Os02g04030
Os.9614.1.S1_at--62--4811Chr02:1749012..1749471 (25 bp)
GCTCGAATCCACCAAGAAGCTTTTG
LOC_Os02g04030
Os.9614.1.S1_at--412--6331Chr02:1748795..1748816 (22 bp)
GATGCAGAATCCATTCCGCTGGTGA
LOC_Os02g04030
Os.9614.1.S1_at--423--9511Chr02:1748725..1748749 (25 bp)
TCTCGTGTGTTGTTTTGTGTGCGTC
LOC_Os02g04030
Os.9614.1.S1_at--686--4111Chr02:1748695..1748719 (25 bp)
CGCTGTATCTGACCCCGTTTGAAAT
LOC_Os02g04030
Os.9614.1.S1_at--698--151Chr02:1748661..1748685 (25 bp)
ATTTTGCTATTTCTGCGGGAGTTGA
LOC_Os02g04030
Os.9614.1.S1_at--445--8771Chr02:1748629..1748653 (25 bp)
TGTTTCCTCCGGGATTTCTGTGAAA
LOC_Os02g04030
Os.9614.1.S1_at--802--2511Chr02:1748537..1748561 (25 bp)
AACTTTTTCTTGCTTACTGGACTGA
LOC_Os02g04030
Os.9614.1.S1_at--516--8531Chr02:1748520..1748544 (25 bp)
TGGACTGAACTGTGTACCCCACTGT
LOC_Os02g04030
Os.9614.1.S1_at--595--6631Chr02:1748497..1748521 (25 bp)
GTTGTGCTGCACGTGCTTTATCAAA
LOC_Os02g04030
Target Sequence 
GTACGAAGCGCTGATCAAGCGGCTCGGCGACCTCGAGGAGAAGGTGGCGGCGCTCACCTCCCGCCCTCCCGAGATGCCCG
CCGACAAGGAGGACTTGCTCAAAGCCGCCGTCACCCGCGTCGAGGCCCTCGAGACCGAGCTCGAATCCACCAAGAAGCTT
TTGGANGACTTCGTCGGGGCAGCAGGAGGAGGTGCTGGCCTACATCGAGAAGAAGAAGAAGAAGAGGGGGATGCAGAATC
CATTCCGCTGGTGATGGACGGGTTTAAAGCAAGAAGCGGTGATGGAGCTCGGTCGTGCGTCTCGTGTGTTGTTTTGTGTG
CGTCGTCGTCGCTGTATCTGACCCCGTTTGAAATGCGNAAAAAATTTTGCTATTTCTGCGGGAGTTGAGTTGAGTTGTTT
CCTCCGGGATTTCTGTGAAATTCATGTTACATACTTCTTGTGTTTCAAAAGGGGCCTTATATGTGTATAGCAAAAGGAAA
AAAAACAAACTTTTTCTTGCTTACTGGACTGAACTGTGTACCCCACTGTTGTGCTGCACGTGCTTTATCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9614.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis