Browse Element(s) Details


Os.21109.1.S1_at

Description gb:AK105135.1
DB_XREF= gi:32990344
TID=Os.21109.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.21109 (NCBI UniGene Cluster)
UG_TITLE=MRNA for SMC3 protein
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-102-A05, full insert sequence.
FL= gb:AK105135.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g040405/11SMC family, C-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g04000OsAffx.11884.1.S1_at11/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04000OsAffx.24088.2.S1_at1/112+1731654..1732793F-box protein interaction domain containing protein
LOC_Os02g04010Os.26853.1.A1_at11/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04010Os.12108.1.S1_at10/112+1734001..1737472Cyclin, N-terminal domain containing protein, expressed
LOC_Os02g04020Os.7324.1.S1_at11/112+1743661..1748216phosphatidylinositol transfer-like protein III, putative, expressed
LOC_Os02g04030Os.9614.1.S1_at11/112+1748459..1753225Phosphatidylinositol/phosphatidylcholine transfer protein, putative, expressed
LOC_Os02g04040Os.21109.1.S1_at5/112+1754861..1757771SMC family, C-terminal domain containing protein, expressed
LOC_Os02g04050NANA2+1758439..1764006SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04060NANA2+1766071..1767766SMC family, C-terminal domain containing protein
LOC_Os02g04070NANA2+1768220..1772620retrotransposon protein, putative, unclassified
LOC_Os02g04080NANA2+1773173..1779320SMC proteins Flexible Hinge Domain containing protein
LOC_Os02g04090OsAffx.15996.1.S1_x_at4/112+1780356..1782004retrotransposon protein, putative, LINE subclass
LOC_Os02g04090OsAffx.27850.1.A1_at1/112+1780356..1782004retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0007059biological_processchromosome segregation
GO:0000796cellular_componentcondensin complex
GO:0005634cellular_componentnucleus
GO:0008278cellular_componentcohesin complex
GO:0005215molecular_functiontransporter activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.21109.1.S1_at--851--10691Chr02:1755251..1755275 (25 bp)
TTGCCATTCAGCGTTGTGATCCAGC
LOC_Os02g04040
Os.21109.1.S1_at--957--611Chr02:1755200..1755224 (25 bp)
ATGCTGCTCTGGATCCACAGTACAG
LOC_Os02g04040
Os.21109.1.S1_at--981--7151Chr02:1755015..1755039 (25 bp)
GTCTAGCTGACATGGCTGACACTCA
LOC_Os02g04040
Os.21109.1.S1_at--479--10011Chr02:1754985..1755009 (25 bp)
TAGCAACGACATTCCGACCAGAAAT
LOC_Os02g04040
Os.21109.1.S1_at--708--971Chr02:1754889..1754913 (25 bp)
AGGAGCAAGCTCTGGACTTCATTGA
LOC_Os02g04040
Os.21109.1.S1_at--435--5631Chr02:1754855..1754879 (25 bp)
GACACACAACGCTAGCTGAGACTAA
NONE
Os.21109.1.S1_at--114--2291Chr02:1754832..1754856 (25 bp)
AAATGCGCTTTTGCCAGTGGTGTGC
NONE
Os.21109.1.S1_at--884--8491Chr02:1754762..1754786 (25 bp)
TGGCTTTGCCTGGATGTTCTATTTC
NONE
Os.21109.1.S1_at--363--131Chr02:1754625..1754649 (25 bp)
ATTCAGTGGTACATGCATCGGCGAC
NONE
Os.21109.1.S1_at--450--5751Chr02:1754603..1754627 (25 bp)
GACGTGGTTGTAACATCGCTATTTA
NONE
Os.21109.1.S1_at--285--9891Chr02:1754570..1754594 (25 bp)
TACATTATAACCTACCGCTTACTAC
NONE
Target Sequence 
TTGCCATTCAGCGTTGTGATCCAGCCCCATTCTATCTGTTTGATGAGATCGATGCTGCTCTGGATCCACAGTACAGAACA
GCTGTCGGCANTATNATCCGCCGTCTAGCTGACATGGCTGACACTCAGTTTATAGCAACGACATTCCGACCAGAAATTGC
AAAAGTTGCTGATAAGATCTATGGTGTGACGCACAAGAACAGGGTTAGCTACATCAATGTGGTGTCAAAGGAGCAAGCTC
TGGACTTCATTGAGCATGACCAGACACACAACGCTAGCTGAGACTAAATGCGCTTTTGCCAGTGGTGTGCTGCAGGCAGA
TGCTAACGTAGAGGTAGTGGAAGCAGGCTGAAATCTGGCTTTGCCTGGATGTTCTATTTCCATGGTTGGATAATTGTACT
AGTTGTGAATATGTAGTTAGCCTTTGGACTTGTAAGTTTCAGCTGATGGGTAGATTGTGTTATCATTATGTTCTGTTTAG
GATAGCACATGTATTCAGTGGTACATGCATCGGCGACGTGGTTGTAACATCGCTATTTATTCTTGTATACATTATAACCT
ACCGCTTACTAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.21109.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis