Browse Element(s) Details


Os.9619.1.S1_at

Description gb:AK103058.1
DB_XREF= gi:32988267
TID=Os.9619.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9619 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033117K11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033117K11, full insert sequence.
FL= gb:AK103058.1 gb:AK059700.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5115011/11Protein SUR2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g51120OsAffx.3034.1.S1_at11/112+31274715..31277298NAC-domain containing protein 9, putative, expressed
LOC_Os02g51130Os.48353.1.S1_at10/112+31278853..31280690Glycosyl transferase family 8 protein, expressed
LOC_Os02g51140Os.14846.1.S1_at11/112+31284801..31293208expressed protein
LOC_Os02g51150Os.9619.1.S1_at11/112+31293730..31295959Protein SUR2, putative, expressed
LOC_Os02g51160OsAffx.24822.1.S1_at11/112+31297671..31300681expressed protein
LOC_Os02g51170OsAffx.24823.1.S1_at11/112+31302554..31303194expressed protein
LOC_Os02g51180Os.9596.1.S1_at10/112+31303885..31306960Cullin family protein, expressed
LOC_Os02g51190OsAffx.29536.5.S1_x_at1/112+31316985..31319277transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0016126biological_processsterol biosynthesis
GO:0016020cellular_componentmembrane
GO:0000254molecular_functionC-4 methylsterol oxidase activity
GO:0003824molecular_functioncatalytic activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9619.1.S1_at--1120--711Chr02:31295382..31295406 (25 bp)
ATGATCATTGTGGTCTGTGGCTTCC
LOC_Os02g51150
Os.9619.1.S1_at--662--7051Chr02:31295409..31295433 (25 bp)
GTAACATCCTCCATGCGCTGTTCAA
LOC_Os02g51150
Os.9619.1.S1_at--89--2491Chr02:31295438..31295462 (25 bp)
AACAGCGCTTATCATGACATTCATC
LOC_Os02g51150
Os.9619.1.S1_at--2--5691Chr02:31295453..31295477 (25 bp)
GACATTCATCATCAGCTCTATGGAA
LOC_Os02g51150
Os.9619.1.S1_at--44--2071Chr02:31295524..31295548 (25 bp)
ACTTGGAACTTACATGCCTTACTCT
LOC_Os02g51150
Os.9619.1.S1_at--718--591Chr02:31295537..31295561 (25 bp)
ATGCCTTACTCTATCGAGCACAGAA
LOC_Os02g51150
Os.9619.1.S1_at--404--1971Chr02:31295618..31295642 (25 bp)
ACTGATTAGTGTATTCTCGGTCCAC
LOC_Os02g51150
Os.9619.1.S1_at--223--8671Chr02:31295655..31295679 (25 bp)
TGTGGTACCCTGATCTTCTAACTAC
LOC_Os02g51150
Os.9619.1.S1_at--958--5591Chr02:31295691..31295715 (25 bp)
GAAATTATCACCTTGTTCGTATAGT
LOC_Os02g51150
Os.9619.1.S1_at--426--6731Chr02:31295728..31295752 (25 bp)
GTTCTCTATATTCTTCTTCTGTTAC
LOC_Os02g51150
Os.9619.1.S1_at--236--6371Chr02:31295831..31295855 (25 bp)
GATCCACTTGGATCTGTTTCCTGGA
LOC_Os02g51150
Target Sequence 
ATGATCATTGTGGTCTGTGGCTTCCTGGTAACATCCTCCATGCGCTGTTCAACAACAACAGCGCTTATCATGACATTCAT
CATCAGCTCTATGGAAACAAGTACAACTTTTCACAACCATTTTTTGTCATTTGGGACAAGATACTTGGAACTTACATGCC
TTACTCTATCGAGCACAGAAAAGGAGGAGGGTTTGAGTCACGGCCAGTTAAACTCAACATAGCAGAGCAGACCAAGACTG
ATTAGTGTATTCTCGGTCCACTACTCTCGGCTCTGTGGTACCCTGATCTTCTAACTACACTGTTGGTGTGAAATTATCAC
CTTGTTCGTATAGTGATGTTTTTCTTGTTCTCTATATTCTTCTTCTGTTACCTTTTGGGAGGGGTTCTCCTTGTACCAAG
GTATAGTGAGTAAATTAGTGTACTATATCAAAGAATACTAAAGCACTAAGATCCACTTGGATCTGTTTCCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9619.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis