Browse Element(s) Details


Os.9630.1.S1_at

Description gb:AK069367.1
DB_XREF= gi:32979391
TID=Os.9630.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.9630 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012O03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012O03, full insert sequence.
FL= gb:AK069367.1 gb:AK058722.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3529011/11Thioredoxin family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35260OsAffx.14148.2.S1_s_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35260OsAffx.14148.1.S1_at11/114+21241121..21258041helicase domain-containing protein, putative, expressed
LOC_Os04g35270OsAffx.14149.1.S1_at11/114+21260515..21262074Alpha4-fucosyltransferase, putative, expressed
LOC_Os04g35280Os.17484.1.S1_at11/114+21264182..21268657Neutral/alkaline invertase, putative, expressed
LOC_Os04g35290Os.9630.1.S1_at11/114+21274652..21277659Thioredoxin family protein, expressed
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0005739cellular_componentmitochondrion
GO:0003756molecular_functionprotein disulfide isomerase activity
GO:0030508molecular_functionthiol-disulfide exchange intermediate activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9630.1.S1_at--908--9631Chr04:21275200..21275224 (25 bp)
TCAGTGGCCCATCTTTCATGGGTTT
LOC_Os04g35290
Os.9630.1.S1_at--328--811Chr04:21275183..21275207 (25 bp)
ATGGGTTTCCTGAACTCTCTTGTCA
LOC_Os04g35290
Os.9630.1.S1_at--932--10811Chr04:21275164..21275188 (25 bp)
TTGTCAGCCTGAACTCGCTATACAT
LOC_Os04g35290
Os.9630.1.S1_at--1100--111Chr04:21275141..21275165 (25 bp)
ATTCTTATATGTGTCTTCGCTCTTC
LOC_Os04g35290
Os.9630.1.S1_at--19--10651Chr04:21275126..21275150 (25 bp)
TTCGCTCTTCTTGGTGTCATGATAT
LOC_Os04g35290
Os.9630.1.S1_at--678--7591Chr04:21275093..21275117 (25 bp)
GGGCAAGATGATACTCCTCAGGTAA
LOC_Os04g35290
Os.9630.1.S1_at--383--11Chr04:21274994..21275018 (25 bp)
GAGGTCAGGTTTCAAACTTCCAAGT
LOC_Os04g35290
Os.9630.1.S1_at--278--6331Chr04:21274969..21274993 (25 bp)
GATGCAATCCTGAAGGACCTGGTTT
LOC_Os04g35290
Os.9630.1.S1_at--42--10151Chr04:21274920..21274944 (25 bp)
TATCTCTGTCGGCAATTATCTAGTT
LOC_Os04g35290
Os.9630.1.S1_at--509--3651Chr04:21274860..21274884 (25 bp)
CTTCTGTTCCTCTGTTTATTTGTTA
LOC_Os04g35290
Os.9630.1.S1_at--919--8291Chr04:21274656..21274680 (25 bp)
GGCTTTTATTTATCACTGCTACCTT
LOC_Os04g35290
Target Sequence 
TCAGTGGCCCATCTTTCATGGGTTTCCTGAACTCTCTTGTCAGCCTGAACTCGCTATACATTCTTATATGTGTCTTCGCT
CTTCTTGGTGTCATGATATACTTTACTGGGCAAGATGATACTCCTCAGGTAAGACGAGCTCATGAAGAGTGAAAGAAGCT
TACCAAAAGAGGCTATCCACCAAGAGATACATATATATATAGTTCAGAGGTCAGGTTTCAAACTTCCAAGTGATGCAATC
CTGAAGGACCTGGTTTTATTGGTTGATTCTGACATTATTGTATCTCTGTCGGCAATTATCTAGTTGTGCCTTGTGCAGTT
GTGCTCTCCTGCGGTTCTGCCTTCTGTTCCTCTGTTTATTTGTTAATTAGAACTAAAACTAGCTTCCACATGTGCATGAT
AGAAAATGTGATTCTTAGTTCAGTTCTAATTTGAACNAGTTNTGTGAAAAATATTTTTGTTGTCCAACTATTGCCAAAAC
GTTTGTACAAGTGATACAATAGTAATAAGGCGTGTATATCTGGAGCGAGGTTTTGTTTACTGCTAGGCTTTTATTTATCA
CTGCTACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9630.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis