Browse Element(s) Details


Os.9642.1.S1_at

Description gb:AK071176.1
DB_XREF= gi:32981199
TID=Os.9642.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9642 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023083O08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023083O08, full insert sequence.
FL= gb:AK071176.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4973011/11MYND finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49660NANA3+28229639..28234007retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g49680OsAffx.25645.1.S1_at11/113+28241608..28243106hypothetical protein
LOC_Os03g49690OsAffx.13425.1.S1_at11/113+28243700..28244656hypothetical protein
LOC_Os03g49700Os.47931.1.A1_at11/113+28246320..28249464Gtk16 protein, putative, expressed
LOC_Os03g49710Os.14353.1.S1_s_at11/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49710OsAffx.25646.1.S1_at10/113+28250462..2825236230S ribosomal protein S13, putative, expressed
LOC_Os03g49720Os.11854.1.S1_at10/113+28254159..28257104plastid-lipid associated protein PAP, putative, expressed
LOC_Os03g49730Os.9642.1.S1_at11/113+28257536..28261285MYND finger family protein, expressed
LOC_Os03g49740OsAffx.25647.2.S1_at11/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_x_at4/113+28262020..28262777hypothetical protein
LOC_Os03g49740OsAffx.25647.1.S1_at3/113+28262020..28262777hypothetical protein
LOC_Os03g49750Os.54016.1.S1_at11/113+28263470..28269081protein kinase family protein, putative, expressed
LOC_Os03g49770Os.6670.1.S1_at11/113+28279127..28288339Oxysterol-binding protein, expressed
LOC_Os03g49770Os.57422.1.S1_x_at10/113+28279127..28288339Oxysterol-binding protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9642.1.S1_at--877--10031Chr03:28258559..28258583 (25 bp)
TAGAGCGGAAGCTTTACCATCCTTT
LOC_Os03g49730
Os.9642.1.S1_at--103--9991Chr03:28258545..28258569 (25 bp)
TACCATCCTTTGTCAATCACTTTGC
LOC_Os03g49730
Os.9642.1.S1_at--158--9691Chr03:28258529..28258553 (25 bp)
TCACTTTGCTTCACACACGGGAAAC
LOC_Os03g49730
Os.9642.1.S1_at--693--7931Chr03:28258225..28258249 (25 bp)
GGATTACAGTTCTATACTTGCGGAA
LOC_Os03g49730
Os.9642.1.S1_at--273--631Chr03:28257874..28257898 (25 bp)
ATGCTCTGATGTCTTTAACCAGGGC
LOC_Os03g49730
Os.9642.1.S1_at--421--3471Chr03:28257855..28257879 (25 bp)
CAGGGCAGCAGATATACTTCGCATA
LOC_Os03g49730
Os.9642.1.S1_at--83--311Chr03:28257842..28257866 (25 bp)
ATACTTCGCATAACGCATGGGACTA
LOC_Os03g49730
Os.9642.1.S1_at--16--2711Chr03:28257766..28257790 (25 bp)
AAGCTTCTTTTAGGCTCTCGGCTGG
LOC_Os03g49730
Os.9642.1.S1_at--1007--1591Chr03:28257706..28257730 (25 bp)
AGCTCCAGGTCATCGTGATGGCAAA
LOC_Os03g49730
Os.9642.1.S1_at--642--351Chr03:28257586..28257610 (25 bp)
ATAAGCTGCCCTGAAGGGCTCGCAT
LOC_Os03g49730
Os.9642.1.S1_at--352--8331Chr03:28257570..28257594 (25 bp)
GGCTCGCATCGGGACAAGAACTGTG
LOC_Os03g49730
Target Sequence 
TAGAGCGGAAGCTTTACCATCCTTTGTCAATCACTTTGCTTCACACACGGGAAACACTCTTGAAGATATATATGGAGTTA
CAAGATTGGCAGACTGCATTGATGTATTGCAGATTGACAATTCCAGTTTATGAAAGAATTTACCCACCTTTTCACCCAAT
GATTGGATTACAGTTCTATACTTGCGGAAAGCTTGAATGGTTGCTTGAGTACACAGAGGATGCTCTGATGTCTTTAACCA
GGGCAGCAGATATACTTCGCATAACGCATGGGACTAAATCCGAGTTCATGAAGGAACTTTTGGGCAAGCTAGAAGAAGTA
AGGGCTGAAGCTTCTTTTAGGCTCTCGGCTGGAGATGAACAATAATTGAGTAACCATTTTATTGTGAAGCTCCAGGTCAT
CGTGATGGCAAATAGAATGTAACAATGTTGCAACAATGTTCAAATAGGATAGTACTAAGTAGACAATCTCTAAATTTAGA
ATAGCTTTGTTAATTCAACATTGGGATATAAGCTGCCCTGAAGGGCTCGCATCGGGACAAGAACTGTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9642.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis