Browse Element(s) Details


Os.9651.1.S1_at

Description gb:AK070669.1
DB_XREF= gi:32980693
TID=Os.9651.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.9651 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023058P11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023058P11, full insert sequence.
FL= gb:AK070669.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5397011/11PA domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53940NANA2+33014746..33018077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53950OsAffx.24859.1.S1_at11/112+33028536..33029978hypothetical protein
LOC_Os02g53960OsAffx.30039.2.S1_s_at11/112+33031809..33032894hypothetical protein
LOC_Os02g53970Os.9651.1.S1_at11/112+33039522..33042134PA domain containing protein, expressed
LOC_Os02g53979NANA2+33042730..33042927NA
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0009827biological_processcell wall modification (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0048196cellular_componentextracellular matrix (sensu Magnoliophyta)
GO:0004252molecular_functionserine-type endopeptidase activity
GO:0004289molecular_functionsubtilase activity
GO:0008236molecular_functionserine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9651.1.S1_at--24--10371Chr02:33040079..33040103 (25 bp)
TTTTCACAAGGGACAGCACGACGAC
LOC_Os02g53970
Os.9651.1.S1_at--383--4951Chr02:33040011..33040035 (25 bp)
GCATTCTCCATGGTGTTTGCGAGGT
LOC_Os02g53970
Os.9651.1.S1_at--954--7231Chr02:33039988..33040012 (25 bp)
GTCCGGTGGTCAGGTAACGCAACGC
LOC_Os02g53970
Os.9651.1.S1_at--466--2611Chr02:33039933..33039957 (25 bp)
AACGCCGTGTACGACGTGACCATCA
LOC_Os02g53970
Os.9651.1.S1_at--131--2031Chr02:33039894..33039918 (25 bp)
ACTAGGCTCACGGTGGCACCAATGA
LOC_Os02g53970
Os.9651.1.S1_at--1--5091Chr02:33039879..33039903 (25 bp)
GCACCAATGAGGCTCACGTTCAACG
LOC_Os02g53970
Os.9651.1.S1_at--857--5791Chr02:33039844..33039868 (25 bp)
GACGCTTGACTATGCGATCACCTTG
LOC_Os02g53970
Os.9651.1.S1_at--506--4631Chr02:33039831..33039855 (25 bp)
GCGATCACCTTGTCGGCAGGGTCAA
LOC_Os02g53970
Os.9651.1.S1_at--775--9671Chr02:33039716..33039740 (25 bp)
TCACCACTTGTGACATTGTATCGTA
LOC_Os02g53970
Os.9651.1.S1_at--644--7071Chr02:33039683..33039707 (25 bp)
GTAATTGAAGGCCATCATCTCAGAT
LOC_Os02g53970
Os.9651.1.S1_at--635--1171Chr02:33039630..33039654 (25 bp)
AGTACTGTATGGATGAACCCGGGAA
LOC_Os02g53970
Target Sequence 
TTTTCACAAGGGACAGCACGACGACCTACTGCTCACGTCGGCCGCCCATCGGGGACCTGAACTACCCGGCATTCTCCATG
GTGTTTGCGAGGTCCGGTGGTCAGGTAACGCAACGCCGCACCGTGACCAACGTCGGGGCGAACACCAACGCCGTGTACGA
CGTGACCATCACCGCGCCGCCTGGCACTAGGCTCACGGTGGCACCAATGAGGCTCACGTTCAACGCGCAGCGCAAGACGC
TTGACTATGCGATCACCTTGTCGGCAGGGTCAAGCNACTCGCCATACAACGCGTGGGGAGATATCGTCTGGAGCGATGGC
CAGCACATGGTGAGGAGCCCCGTCGTGGCCACCTGGAAATAAATCACCACTTGTGACATTGTATCGTACGTTTATAGTAA
TTGAAGGCCATCATCTCAGATGGTGCCATGATGTAAACGTAACATACGTAGTACTGTATGGATGAACCCGGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9651.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis