Browse Element(s) Details


OsAffx.30039.2.S1_s_at

Description tigr:9630.m05341
TID=OsAffx.30039.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5396011/11hypothetical protein
LOC_Os09g2650011/11serine hydrolase, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53920NANA2+33007491..33008047retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53930Os.47463.1.S1_x_at6/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53930Os.14491.2.S1_x_at5/112+33009988..33012249transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53940NANA2+33014746..33018077transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g53950OsAffx.24859.1.S1_at11/112+33028536..33029978hypothetical protein
LOC_Os02g53960OsAffx.30039.2.S1_s_at11/112+33031809..33032894hypothetical protein
LOC_Os02g53970Os.9651.1.S1_at11/112+33039522..33042134PA domain containing protein, expressed
LOC_Os02g53979NANA2+33042730..33042927NA
LOC_Os02g53990Os.50421.1.S1_at11/112+33048306..33060760cyclin, putative, expressed
LOC_Os02g53990Os.4183.1.S1_a_at2/112+33048306..33060760cyclin, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.30039.2.S1_s_at--616--6092Chr09:16013751..16013775 (25 bp)
GAGGGCATGATACTGCTGCAGCCAT
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--862--7592Chr09:16013753..16013777 (25 bp)
GGGCATGATACTGCTGCAGCCATAC
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--961--4992Chr09:16013755..16013779 (25 bp)
GCATGATACTGCTGCAGCCATACTT
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--985--6472Chr09:16013759..16013783 (25 bp)
GATACTGCTGCAGCCATACTTCTGG
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--961--3952Chr09:16013842..16013866 (25 bp)
CGGAGAGGATCGACGCCCTCTGGCC
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--168--5792Chr09:16013849..16013873 (25 bp)
GATCGACGCCCTCTGGCCGTACGTG
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--1071--4152Chr09:16013924..16013948 (25 bp)
CGCCGAGGCGATAGCGTCGCTGCCG
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--815--1972Chr09:16014079..16014103 (25 bp)
ACTGCTTCCACCTCTTGCCGGAGTT
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--262--1392Chr09:16014118..16014142 (25 bp)
AGACCGGCGTGCTCATGGATCGCGT
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--1118--4652Chr09:16014124..16014148 (25 bp)
GCGTGCTCATGGATCGCGTCGCCAT
LOC_Os09g26500
OsAffx.30039.2.S1_s_at--20--9632Chr09:16014130..16014154 (25 bp)
TCATGGATCGCGTCGCCATGTTCAT
LOC_Os09g26500
Target Sequence 
GAGGGCATGATACTGCTGCAGCCATACTTCTGGGGCACCAAGCGGCTGCCGTGCGAGACGCCGGACGCCTGCTGGCGCAC
GCGCGGGTCGCCGCCGATGCTGCTGCCGGAGAGGATCGACGCCCTCTGGCCGTACGTGACGGCGGGCGCGGCGGCCAACA
ACGGCGACGATCCCCGGATCGACCCTTCCGCCGAGGCGATAGCGTCGCTGCCGTGCCGCCGCGCGCTGGTGTCCGTGGCC
ACGGAGGACGTCCTGCGCGGCCGCGGCCGCCGATACGCCGCCGCGTGGGGTGACAGTGGCAGCCACAGGGCGGCGACGCT
CGTGGAGTCCAAGGGCGTGGACCACTGCTTCCACCTCTTGCCGGAGTTCAGCTCCCACGCCGAGACCGGCGTGCTCATGG
ATCGCGTCGCCATGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.30039.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis