Browse Element(s) Details


Os.9668.1.S1_at

Description gb:AK067843.1
DB_XREF= gi:32977861
TID=Os.9668.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.9668 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013127F16, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013127F16, full insert sequence.
FL= gb:AK067843.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4352011/11CbbY protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g43480Os.47463.1.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43480Os.14491.2.S1_x_at1/1112+26939536..26944530transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g43490OsAffx.32171.3.S1_at11/1112+26946519..26947438Alpha-amylase/trypsin inhibitor, putative, expressed
LOC_Os12g43500NANA12+26949986..26951207hypothetical protein
LOC_Os12g43510OsAffx.7879.1.S1_at11/1112+26951810..26952695expressed protein
LOC_Os12g43510Os.12880.1.S1_s_at11/1112+26951810..26952695expressed protein
LOC_Os12g43520Os.9668.1.S1_at11/1112+26963921..26968127CbbY protein, putative, expressed
LOC_Os12g43530OsAffx.7880.1.S1_at11/1112+26973985..26976015No apical meristem protein
LOC_Os12g43540OsAffx.20105.1.S1_at11/1112+26981668..26982581hypothetical protein
LOC_Os12g43550Os.11076.1.S1_at11/1112+26988371..26991602Ras-related protein RHN1, putative, expressed
LOC_Os12g43560Os.19944.1.S1_at10/1112+26991714..26996384zinc finger family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9668.1.S1_at--795--6671Chr12:26964645..26964669 (25 bp)
GTTGCGTCCATTCTGAAACTTAGTG
LOC_Os12g43520
Os.9668.1.S1_at--130--3011Chr12:26964528..26964636 (25 bp)
AATGCAGCGTCTAAAAGCTCCGAGA
LOC_Os12g43520
Os.9668.1.S1_at--683--2811Chr12:26964504..26964528 (25 bp)
AAGATTATTGTCACTCTACGCGCTG
LOC_Os12g43520
Os.9668.1.S1_at--400--1911Chr12:26964463..26964487 (25 bp)
ACGGGACGTGCAAAACTGTGTTCTT
LOC_Os12g43520
Os.9668.1.S1_at--843--7411Chr12:26964446..26964470 (25 bp)
GTGTTCTTGTCGCAGGTAGCCAATC
LOC_Os12g43520
Os.9668.1.S1_at--1079--6731Chr12:26964417..26964441 (25 bp)
GTTCTTGCAGCTGAGCGCATTGGTA
LOC_Os12g43520
Os.9668.1.S1_at--1139--9791Chr12:26964265..26964289 (25 bp)
TAACCGCCAGAGCTGAGTTTCACTC
LOC_Os12g43520
Os.9668.1.S1_at--441--6071Chr12:26964251..26964275 (25 bp)
GAGTTTCACTCTGCGAAGGCCGTCA
LOC_Os12g43520
Os.9668.1.S1_at--1011--6991Chr12:26964211..26964235 (25 bp)
GTACTGACTTGACCATATCGAAACT
LOC_Os12g43520
Os.9668.1.S1_at--352--8591Chr12:26964173..26964197 (25 bp)
TGGTCTTGACAACTCGGCACTACAT
LOC_Os12g43520
Os.9668.1.S1_at--638--8551Chr12:26964148..26964172 (25 bp)
TGGAGTTGCCTGCTACTAGTTTGAA
LOC_Os12g43520
Target Sequence 
GTTGCGTCCATTCTGAAACTTAGTGTTGATATCAATGCAGCGTCTAAAAGCTCCGAGAAGATTATTGTCACTCTACGCGC
TGGATCCGAGTATGTTGGACGGGACGTGCAAAACTGTGTTCTTGTCGCAGGTAGCCAATCTGGCGTTCTTGCAGCTGAGC
GCATTGGTATGCCATGCATAGTTGTTAGAAGCAGCCTAACCGCCAGAGCTGAGTTTCACTCTGCGAAGGCCGTCATGGAT
GGATTTGGTGGTACTGACTTGACCATATCGAAACTATTGAGCAAGAAGTGGTCTTGACAACTCGGCACTACATTGGAGTT
GCCTGCTACTAGTTTGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9668.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis