Browse Element(s) Details


Os.9674.1.S1_at

Description gb:AK068404.1
DB_XREF= gi:32978422
TID=Os.9674.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9674 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013151C08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013151C08, full insert sequence.
FL= gb:AK068404.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4952011/11pinin/SDK/memA/ protein conserved region containing protein, expressed
LOC_Os01g416501/11pentatricopeptide, putative, expressed
LOC_Os06g175801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
LOC_Os03g49520Os.9674.1.S1_at11/113+28135377..28139289pinin/SDK/memA/ protein conserved region containing protein, expressed
LOC_Os03g49524Os.32285.1.S1_at11/113+28142975..28145688UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed
LOC_Os03g49530Os.14919.1.S1_at5/113+28150804..28156921hypothetical protein
LOC_Os03g49530Os.56216.1.S1_at1/113+28150804..28156921hypothetical protein
LOC_Os03g49540NANA3+28162617..28165110transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9674.1.S1_at--1120--1831Chr03:28135779..28135803 (25 bp)
ACGCACAGGGCGGAGCATGGTCCAA
LOC_Os03g49520
Os.9674.1.S1_at--1135--6291Chr03:28135677..28135701 (25 bp)
GATGAAGTCCTTGGCATTAACGAGC
LOC_Os03g49520
Os.9674.1.S1_at--310--6311Chr03:28135644..28135668 (25 bp)
GATGAGCAAACCAAGCCGTCTGAAG
LOC_Os03g49520
Os.9674.1.S1_at--817--6151Chr03:28135556..28135580 (25 bp)
GAGGTAGGCATCTAGGAGTTCCACA
LOC_Os03g49520
Os.9674.1.S1_at--874--9211Chr03:28135537..28135561 (25 bp)
TCCACATTTGATATCCTTCAGCTGC
LOC_Os03g49520
Os.9674.1.S1_at--125--9171Chr03:28135515..28135539 (25 bp)
TGCCCTCATTTTCTGACGCTTGTTG
LOC_Os03g49520
Os.9674.1.S1_at--40--1851Chr03:28135500..28135524 (25 bp)
ACGCTTGTTGTATGTCTGTTGACGC
LOC_Os03g49520
Os.9674.1.S1_at--583--8812Chr06:10201392..10201416 (24 bp)
TGTTGACGCTTGAGATTTTCCCCGC
LOC_Os06g17580
Os.9674.1.S1_at--655--10651Chr03:28135467..28135491 (25 bp)
TTCCCCGCTGTTATCAAGCCATATA
LOC_Os03g49520
Os.9674.1.S1_at--104--10711Chr03:28135427..28135451 (25 bp)
TTGCCGTTGAGCGATATACTCTGTT
LOC_Os03g49520
Os.9674.1.S1_at--176--2012Chr01:23910884..23910906 (22 bp)
ACTCTGTTAATCATTGCATCCTTTG
LOC_Os01g41650
Target Sequence 
ACGCACAGGGCGGAGCATGGTCCAAAAACTCGACGAGTTCTTGAGGGTGGCAATGACGATGAGGATGATATGGACGATAT
GGCCGTGGAAGATGAGCTGATGGATGAAGTCCTTGGCATTAACGAGCCAATCAGCGATGAGCAAACCAAGCCGTCTGAAG
AAGCTGCTGATGGTGTTCCGGTGTCTGAGGAAGTGCAATAGGTAATTTGTTTTGTATTGTTGCGAGGTAGGCATCTAGGA
GTTCCACATTTGATATCCTTCAGCTGCCCTCATTTTCTGACGCTTGTTGTATGTCTGTTGACGCTTGAGATTTTCCCCGC
TGTTATCAAGCCATATATTGTTGCGGGATGTATTGCCGTTGAGCGATATACTCTGTTAATCATTGCATCCTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis