Browse Element(s) Details


Os.16054.1.S1_at

Description gb:AK071171.1
DB_XREF= gi:32981194
TID=Os.16054.1
CNT=7
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16054 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023082E03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023082E03, full insert sequence.
FL= gb:AK071171.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4949010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed
LOC_Os03g49510Os.38046.1.S1_s_at10/113+28129401..28135291Phosphatidylinositol-4-phosphate 5-kinase 1 precursor, putative, expressed
LOC_Os03g49520Os.9674.1.S1_at11/113+28135377..28139289pinin/SDK/memA/ protein conserved region containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16054.1.S1_at--302--4391Chr03:28114242..28114266 (25 bp)
CCAAGGGAGCTGTCGTGTCTGCCAA
LOC_Os03g49490
Os.16054.1.S1_at--511--1071Chr03:28114239..28114263 (25 bp)
AGGGAGCTGTCGTGTCTGCCAAATT
LOC_Os03g49490
Os.16054.1.S1_at--512--1531Chr03:28114187..28114211 (25 bp)
AGCAGTGAAATTATGCATGCGCGAT
LOC_Os03g49490
Os.16054.1.S1_at--933--10131Chr03:28114176..28114200 (25 bp)
TATGCATGCGCGATGATCAGCAATT
LOC_Os03g49490
Os.16054.1.S1_at--1039--4551Chr03:28114169..28114193 (25 bp)
GCGCGATGATCAGCAATTTGTACAT
LOC_Os03g49490
Os.16054.1.S1_at--168--7031Chr03:28114150..28114174 (25 bp)
GTACATACAAAAACTATCCTTGTCA
LOC_Os03g49490
Os.16054.1.S1_at--506--7351Chr03:28114106..28114130 (25 bp)
GTGAATTATGGTTTGTTCTGAACTG
LOC_Os03g49490
Os.16054.1.S1_at--49--811Chr03:28114099..28114123 (25 bp)
ATGGTTTGTTCTGAACTGTTTGTTC
LOC_Os03g49490
Os.16054.1.S1_at--655--5211Chr03:28114030..28114054 (25 bp)
GAATTCGTTTATTGAGTCTGTATAA
LOC_Os03g49490
Os.16054.1.S1_at--872--8751Chr03:28114012..28114036 (25 bp)
TGTATAATGATACATCTGCTTGACA
LOC_Os03g49490
Os.16054.1.S1_at--888--10751NONE
TTGACATATTCTCTCTTTCCATCCC
NONE
Target Sequence 
CCAAGGGAGCTGTCGTGTCTGCCAAATTNGTCATGAAGGCNCTGTGAAGTGTGAAAGCAGTGAAATTATGCATGCGCGAT
GATCAGCAATTTGTACATACAAAAACTATCCTTGTCAATTGTACATANGTGAAATTGTGAATTATGGTTTGTTCTGAACT
GTTTGTTCAGAAGNGTCATAACTCATAAANNTTATGAAATGTGAAATGGTGGAANGAATTCGTTTATTGAGTCTGTATAA
TGATACATCTGCTTGACAAGTTGACATATTCTCTCTTTCCATCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16054.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis