Browse Element(s) Details


Os.16659.1.S1_at

Description gb:AK109455.1
DB_XREF= gi:32994664
TID=Os.16659.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.16659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-118-H10, full insert sequence.
FL= gb:AK109455.1 gb:AK110740.1 gb:AK120078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4943011/11Prp18 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008380biological_processRNA splicing
GO:0005681cellular_componentspliceosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16659.1.S1_at--307--5211Chr03:28089929..28089953 (25 bp)
GAATTTATTGAATGCCTCCGATGCT
LOC_Os03g49430
Os.16659.1.S1_at--678--10091Chr03:28089803..28089827 (25 bp)
TAGGAGCTTGGGATGCTTCACTGTG
LOC_Os03g49430
Os.16659.1.S1_at--1097--7871Chr03:28089725..28089749 (25 bp)
GGTTATGTGAGCTTCCATTTTGAAA
LOC_Os03g49430
Os.16659.1.S1_at--497--10631Chr03:28089674..28089698 (25 bp)
TTCGATGAAACACCAAACTGCCTTT
LOC_Os03g49430
Os.16659.1.S1_at--70--3291Chr03:28089661..28089685 (25 bp)
CAAACTGCCTTTGTACTGGTGGCAC
LOC_Os03g49430
Os.16659.1.S1_at--310--2251Chr03:28089621..28089645 (25 bp)
AAATTCGTTTCCAATATCGGCTATA
LOC_Os03g49430
Os.16659.1.S1_at--1031--2971Chr03:28089531..28089555 (25 bp)
AATGTGTTCTCTTCTTAGTTCCTTG
LOC_Os03g49430
Os.16659.1.S1_at--627--9271Chr03:28089461..28089485 (25 bp)
TCCGGCGAACAAGACAGCAGATATT
LOC_Os03g49430
Os.16659.1.S1_at--1089--10211Chr03:28089431..28089455 (25 bp)
TATTCTTCTCAAGTTCCAACCTTTG
LOC_Os03g49430
Os.16659.1.S1_at--435--3251Chr03:28089415..28089439 (25 bp)
CAACCTTTGCGCTTTCTTATTATCA
LOC_Os03g49430
Os.16659.1.S1_at--745--3291Chr03:28089392..28089416 (25 bp)
CAAAGTGTCTCATGATGTGTTCAGA
LOC_Os03g49430
Target Sequence 
GAATTTATTGAATGCCTCCGATGCTTTCAAAACCCAAAGTTAGTGGAGTGAGTCTGTAAGATGTGCTAAAAGAACAGTAT
GAAGCATTACANTTTTACAACCAATGTTTGNCTGCATAAGGNACANTGTTAGGAGCTTGGGATGCTTCACTGTGGAAGGG
GAAATGCAAGCCTTACAGAACACATGATATAGTGAAGAAGCCAAATAGGTTATGTGAGCTTCCATTTTGAAAATGCACTT
CATAAGACATGCAACAGTTTCGATGAAACACCAAACTGCCTTTGTACTGGTGGCACATTGTAGATATTGCAAAATTCGTT
TCCAATATCGGCTATAATTTTGTAGGCATGAACTAAGTGGTAATGCTACTGAGTGATTTGAGTGTGTTGCAAATATTGTT
TAATGTGTTCTCTTCTTAGTTCCTTGTAGCATGAAGATGTTGACAGACAGAAGCTGGTAATCATCATACATTCCGGCGAA
CAAGACAGCAGATATTACATGTATTCTTCTCAAGTTCCAACCTTTGCGCTTTCTTATTATCAAAGTGTCTCATGATGTGT
TCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16659.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis