Browse Element(s) Details


Os.5147.1.S1_at

Description gb:AK099563.1
DB_XREF= gi:32984772
TID=Os.5147.1
CNT=32
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5147 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013034L20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013034L20, full insert sequence.
FL= gb:AK061982.1 gb:AK061528.1 gb:AK099563.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4944011/11Phosphatase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein
LOC_Os03g49500Os.1377.1.S1_at11/113+28118991..28123264Ethylene receptor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5147.1.S1_at--433--5491Chr03:28093943..28093967 (25 bp)
GAACATCGCCGCAGGAAAAGCTCTT
LOC_Os03g49440
Os.5147.1.S1_at--154--5011Chr03:28093953..28093977 (25 bp)
GCAGGAAAAGCTCTTAGCCTCCGCA
LOC_Os03g49440
Os.5147.1.S1_at--929--2911Chr03:28095020..28095044 (25 bp)
AAGGAGGCCGACTACGCTCTTGAGA
LOC_Os03g49440
Os.5147.1.S1_at--193--9591Chr03:28095037..28095061 (25 bp)
TCTTGAGAGCATCGGCAGCCTCCGG
LOC_Os03g49440
Os.5147.1.S1_at--46--3011Chr03:28095148..28095172 (25 bp)
AATGAGGTCCGATCTGGACTCCATC
LOC_Os03g49440
Os.5147.1.S1_at--736--1131Chr03:28095187..28095211 (25 bp)
AGTCCTGGCGTAATCGGTTCCTAAT
LOC_Os03g49440
Os.5147.1.S1_at--313--7911Chr03:28095202..28095226 (25 bp)
GGTTCCTAATCCATTCGCACATAAA
LOC_Os03g49440
Os.5147.1.S1_at--250--5171Chr03:28095246..28095270 (25 bp)
GCAAGTACTGTCCATTAATTATCAT
LOC_Os03g49440
Os.5147.1.S1_at--1158--10591Chr03:28095279..28095303 (25 bp)
TTCTGATTCCTGATGCTGAGTGCGT
LOC_Os03g49440
Os.5147.1.S1_at--976--6871Chr03:28095311..28095335 (25 bp)
GTATTTGTATATGGGCCTGGCTGAC
LOC_Os03g49440
Os.5147.1.S1_at--940--8212Chr03:28095413..28095437 (25 bp)
GGAATTTGTCTTTGATTGCTGTTTT
LOC_Os03g49440
Target Sequence 
GAACATCGCCGCAGGAAAAGCTCTTAGCCTCCGCACCGTCCTGGTTGGCAAGAGGGTGAGGAGCAAGGAGGCCGACTACG
CTCTTGAGAGCATCGGCAGCCTCCGGCGAGCCATCCCGGAGATTTGGGGCGGCGTCGCCGTCGCCGTCGCCGGCGAACAG
CTCGACCACGGCGCCGCGGAGAAGACGAAGGGAATGAGGTCCGATCTGGACTCCATCATCCAGCCAACGTCAGTCCTGGC
GTAATCGGTTCCTAATCCATTCGCACATAAACAAATCGCCACTAATAAAAGCAAGTACTGTCCATTAATTATCATGTAAA
TTATTCTGATTCCTGATGCTGAGTGCGTGTGCAGTGTATTTGTATATGGGCCTGGCTGACAAGGAAATATGCATGTGTAT
ATCAGTTCTGATGATCAGCTTTTGTTTGCTGTAAAATGTAAATGGCACTATGAGCAAGGAATTTGTCTTTGATTGCTGTT
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis