Browse Element(s) Details


OsAffx.27323.1.S1_at

Description tigr:9633.m04267
TID=OsAffx.27323.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4553011/11hypothetical protein
LOC_Os03g494101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27323.1.S1_at--32--3351Chr05:26312214..26312238 (25 bp)
CACGACATGGATCCCGTGCGAGCTC
LOC_Os05g45530
OsAffx.27323.1.S1_at--475--4431Chr05:26312242..26312266 (25 bp)
GCCATGTTCTTGGAGGCGCACAGGC
LOC_Os05g45530
OsAffx.27323.1.S1_at--59--9211Chr05:26312272..26312296 (25 bp)
TGCCAAGCTCGTCGCGGATAGGCAA
LOC_Os05g45530
OsAffx.27323.1.S1_at--446--1351Chr05:26312312..26312336 (25 bp)
AGAGCGGGACGGCTTCGGCACCGAG
LOC_Os05g45530
OsAffx.27323.1.S1_at--508--4651Chr05:26312406..26312430 (25 bp)
GCGTCATCCACGCACGGGAAAGCAA
LOC_Os05g45530
OsAffx.27323.1.S1_at--115--4371Chr05:26312413..26312437 (25 bp)
CCACGCACGGGAAAGCAACGAAGTT
LOC_Os05g45530
OsAffx.27323.1.S1_at--1031--4994Chr12:20841680..20841795 (25 bp)
GCATGGATCCAATTTTCTAAAATTT
NONE
OsAffx.27323.1.S1_at--489--2251Chr05:26312498..26312522 (25 bp)
AAATTTCAGTGGCATCTGGCCGATA
LOC_Os05g45530
OsAffx.27323.1.S1_at--843--8491Chr05:26312507..26312531 (25 bp)
TGGCATCTGGCCGATATCGCGAATA
LOC_Os05g45530
OsAffx.27323.1.S1_at--158--491Chr05:26312511..26312535 (25 bp)
ATCTGGCCGATATCGCGAATATGTG
LOC_Os05g45530
OsAffx.27323.1.S1_at--735--253Chr05:26312520..26312544 (25 bp)
ATATCGCGAATATGTGTGGCATTTT
LOC_Os05g45530
Target Sequence 
CACGACATGGATCCCGTGCGAGCTCGCCGCCATGTTCTTGGAGGCGCACAGGCGGAGGTGCCAAGCTCGTCGCGGATAGG
CAATGGTGGCGTGTGGCCAGAGCGGGACGGCTTCGGCACCGAGCTGGAGGCCGCCGTGCTCGACTAGCCCCGGCGTCGGC
TTCTCACCATGGCGTCGAGTGGAGCGGCGGCGGCGTCATCCACGCACGGGAAAGCAACGAAGTTGGCGCCGTGGATGGGG
AGGGGATGGAAAACGTGACGGAGGGGCATGGATCCAATTTTCTAAAATTTCAGTGGCATCTGGCCGATATCGCGAATATG
TGTGGCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27323.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis