Browse Element(s) Details


Os.9327.1.S1_at

Description gb:AK103685.1
DB_XREF= gi:32988894
TID=Os.9327.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.9327 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033136F17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033136F17, full insert sequence.
FL= gb:AK103685.1 gb:AK063991.1 gb:AK099359.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4546011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9327.1.S1_at--177--10551Chr05:26289111..26289135 (25 bp)
TTCATCCCGTCGAACAAGTGGCTGG
LOC_Os05g45460
Os.9327.1.S1_at--528--1311Chr05:26289319..26289343 (25 bp)
AGATGTGCGTTCACGCATATCGCCA
LOC_Os05g45460
Os.9327.1.S1_at--605--3351Chr05:26289330..26289354 (25 bp)
CACGCATATCGCCAATTTAGTTAGT
LOC_Os05g45460
Os.9327.1.S1_at--197--1191Chr05:26289385..26289409 (25 bp)
AGTTCGTGCACGTTATTTGGAATTA
LOC_Os05g45460
Os.9327.1.S1_at--198--151Chr05:26289423..26289447 (25 bp)
ATTAGCTAGCTCGTCTTTTGGTCGA
LOC_Os05g45460
Os.9327.1.S1_at--1136--9351Chr05:26289444..26289468 (25 bp)
TCGATGGAGCATTTGTTGTAACCTT
LOC_Os05g45460
Os.9327.1.S1_at--52--8751Chr05:26289460..26289484 (25 bp)
TGTAACCTTGTAGTAGCTCGTCGCT
LOC_Os05g45460
Os.9327.1.S1_at--348--1591Chr05:26289474..26289498 (25 bp)
AGCTCGTCGCTTAGGTTTGCAGTGG
LOC_Os05g45460
Os.9327.1.S1_at--186--10271Chr05:26289489..26289513 (25 bp)
TTTGCAGTGGTTTTAGTTCGCTCGT
LOC_Os05g45460
Os.9327.1.S1_at--1075--6691Chr05:26289504..26289528 (25 bp)
GTTCGCTCGTCAGTGTAATGTCATG
LOC_Os05g45460
Os.9327.1.S1_at--320--471Chr05:26289541..26289565 (25 bp)
ATCTGAGTACGTCTATCCTTTCGGT
LOC_Os05g45460
Target Sequence 
TTCATCCCGTCGAACAAGTGGCTGGGGCTCACGCTGGAGAGGGAGAGGGTGGCGTCGCTGCCCAAGGGCGTCCGCGGCGT
GTACCGCCCCAAGAGCACGCTCATGTTCGGCCCCGGCACCGGCGGCAAGTGCCCGGCCGCCGCCGCCGCCGACGCCGCCG
GCGTGCCGATGATGTGATGAGACGATCGATATTGACATGGAGAATTCGAGATGTGCGTTCACGCATATCGCCAATTTAGT
TAGTGGTTTGGTTGGATGATGCATGGTTTAATTAAGTTCGTGCACGTTATTTGGAATTAATAATGGGTAGAAATTAGCTA
GCTCGTCTTTTGGTCGATGGAGCATTTGTTGTAACCTTGTAGTAGCTCGTCGCTTAGGTTTGCAGTGGTTTTAGTTCGCT
CGTCAGTGTAATGTCATGAGAAAAAAAAATTATCTGAGTACGTCTATCCTTTCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis