Browse Element(s) Details


Os.50268.1.S1_at

Description gb:AK120442.1
DB_XREF= gi:37990065
TID=Os.50268.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50268 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013098O22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013098O22, full insert sequence.
FL= gb:AK120442.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4544010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50268.1.S1_at--746--3971Chr05:26283298..26283322 (25 bp)
CGGTGCAGCCATACGAGACACGCGC
LOC_Os05g45440
Os.50268.1.S1_at--661--5871Chr05:26283373..26283397 (25 bp)
GAGCGCGCTTACACCGGTGGAACTG
LOC_Os05g45440
Os.50268.1.S1_at--523--1951Chr05:26283394..26283418 (25 bp)
ACTGGAGATACGGTGGTGCCAGCAT
LOC_Os05g45440
Os.50268.1.S1_at--720--2892Chr05:26283450..26283474 (25 bp)
AAGGTGGTGATCGTGCCGCCGCACC
LOC_Os05g45440
Os.50268.1.S1_at--340--2911Chr05:26283637..26283661 (25 bp)
AAGGATGATGATGCATGCGCTGCTG
LOC_Os05g45440
Os.50268.1.S1_at--299--4551NONE
GCGCTGCTGCCATTGAAGGTTAAGG
NONE
Os.50268.1.S1_at--1089--5331Chr05:26283687..26283711 (25 bp)
GAAGTTGAAGCTGTATATGCATCCA
LOC_Os05g45440
Os.50268.1.S1_at--778--8191Chr05:26283713..26283737 (25 bp)
GGAAGTACTGGATTTGTATCATGAA
LOC_Os05g45440
Os.50268.1.S1_at--499--6291Chr05:26283759..26283783 (25 bp)
GATGATTTGGGAGCTCGATTTGAAT
LOC_Os05g45440
Os.50268.1.S1_at--4--6531Chr05:26283775..26283799 (25 bp)
GATTTGAATTGGTCTCGTTGCTTTA
LOC_Os05g45440
Os.50268.1.S1_at--109--7811Chr05:26283785..26283809 (25 bp)
GGTCTCGTTGCTTTAATTTTACTTG
LOC_Os05g45440
Target Sequence 
CGGTGCAGCCATACGAGACACGCGCGCCCACGCCGCGCGTCAAGCACTCTCGGCCGGTGGACGTCCCCTGCAGGGGAGCG
CGCTTACACCGGTGGAACTGGAGATACGGTGGTGCCAGCATGGAGGAGGACGGCCACGGCAGCGTCGTCGGGAAGGTGGT
GATCGTGCCGCCGCACCTGCTGCTGCTGTTCGGCGTGCGGCGGCCGGAGGAGGAGGAGGAGGAGGAGATGGCGGCGGCGC
CGTGCACGCTGCCGTCGTCGTTGGGGACGCGGCCGTGCAAGCGGGCGCGCGACCTGCGCCACCTGCGCAACTCGGTGCTG
CGGATGACCGGGTTCATCGAAGGATGATGATGCATGCGCTGCTGCCATTGAAGGTTAAGGACAGGTTATGAAGTTGAAGC
TGTATATGCATCCATGGAAGTACTGGATTTGTATCATGAATGAGGAATTAAAATGTAAGAAGATGATTTGGGAGCTCGAT
TTGAATTGGTCTCGTTGCTTTAATTTTACTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50268.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis