Browse Element(s) Details


OsAffx.4624.1.S1_at

Description tigr:9633.m04261
TID=OsAffx.4624.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4547010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4624.1.S1_at--157--10531Chr05:26291382..26291406 (25 bp)
TTCAGCGAAGCAGCAAGGTCACACT
LOC_Os05g45470
OsAffx.4624.1.S1_at--715--5691Chr05:26291463..26291487 (25 bp)
GACTCAACTGCCCATCAATTTGTGC
LOC_Os05g45470
OsAffx.4624.1.S1_at--597--2551Chr05:26291468..26291492 (25 bp)
AACTGCCCATCAATTTGTGCTCGAT
LOC_Os05g45470
OsAffx.4624.1.S1_at--710--8691Chr05:26291483..26291507 (25 bp)
TGTGCTCGATGTACTCAACTATTCA
LOC_Os05g45470
OsAffx.4624.1.S1_at--665--7011Chr05:26291493..26291517 (25 bp)
GTACTCAACTATTCAAGCAGTCAAG
LOC_Os05g45470
OsAffx.4624.1.S1_at--351--2251Chr05:26291526..26291550 (25 bp)
AAATTCTTCATCTAGACCGCTGGAG
LOC_Os05g45470
OsAffx.4624.1.S1_at--77--10031Chr05:26291538..26291562 (25 bp)
TAGACCGCTGGAGTTCGCCACTGCT
LOC_Os05g45470
OsAffx.4624.1.S1_at--792--3251NONE
CAACCCAATGTCCTGCTGAGAGACT
NONE
OsAffx.4624.1.S1_at--1106--9111Chr05:26292297..26292317 (21 bp)
TGCTGAGAGACTGGACGAACCTCGG
LOC_Os05g45470
OsAffx.4624.1.S1_at--467--4151Chr05:26292539..26292563 (25 bp)
CGCCCGCGCGGGAGAATATGATCGT
LOC_Os05g45470
OsAffx.4624.1.S1_at--956--8051Chr05:26292549..26292573 (25 bp)
GGAGAATATGATCGTAGCAACCGCG
LOC_Os05g45470
Target Sequence 
TTCAGCGAAGCAGCAAGGTCACACTGGTGGGGGCGAAGCGGTGGCCTGCGAGAGGTCAGCAAGCTCCTCACCCTACGGTC
AGACTCAACTGCCCATCAATTTGTGCTCGATGTACTCAACTATTCAAGCAGTCAAGCTTGCTACAAATTCTTCATCTAGA
CCGCTGGAGTTCGCCACTGCTCCCCAACCCAATGTCCTGCTGAGAGACTGGACGAACCTCGGGGAAGGGCCCGCGGGGCT
GATCGCGGAGCGCCTCCTCGCGAGCGACGTCGCGGACTACGTCACCTTCCGCGCGGTCTGCCGCCCGTGGCGCCTCTGCT
GCGCGGACCCGCGCGCGCACGGCGTCCTGGACCGCCGGTTCCACCCGCGCCGGTGGATCACGCTGAGGGGCACCCGCGCA
CCTCCCCGTGCCGCCGCTGCCTCTGCAGTCTGCACGCCGCCACCGCCCGCGCGGGAGAATATGATCGTAGCAACCGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4624.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis