Browse Element(s) Details


Os.3393.1.S2_at

Description gb:AF062479.1
DB_XREF= gi:4091884
GEN=Snf1
TID=Os.3393.1
CNT=33
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.3393 (NCBI UniGene Cluster)
DEF=Oryza sativa protein kinase SNF1 (Snf1) mRNA, complete cds.
PROD=protein kinase SNF1
FL= gb:D82039.1 gb:AK067158.1 gb:AF062479.1 gb:AK069613.1 gb:AK104868.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4542011/11SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0046777biological_processprotein amino acid autophosphorylation
GO:0000152cellular_componentnuclear ubiquitin ligase complex
GO:0004672molecular_functionprotein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.3393.1.S2_at--354--2891Chr05:26264298..26264322 (25 bp)
AAGGGTCAGTGGACCACAGCTTCTC
LOC_Os05g45420
Os.3393.1.S2_at--566--9491Chr05:26264258..26264282 (25 bp)
TCTGCCTTTCTAACTCAGCTGAGAG
LOC_Os05g45420
Os.3393.1.S2_at--1066--5991Chr05:26264238..26264262 (25 bp)
GAGAGTCCTTTAATTATGCCGTTGT
LOC_Os05g45420
Os.3393.1.S2_at--206--5491Chr05:26264200..26264224 (25 bp)
GAACTTCCTGCAGCATACCGTGGAT
LOC_Os05g45420
Os.3393.1.S2_at--1116--351Chr05:26264149..26264173 (25 bp)
ATAATGACCATAATCCTCCAGTAGA
LOC_Os05g45420
Os.3393.1.S2_at--457--6211Chr05:26264096..26264120 (25 bp)
GAGGCTGCCAGTGATGTATTTTGAC
LOC_Os05g45420
Os.3393.1.S2_at--668--5011Chr05:26264044..26264068 (25 bp)
GCAGGAGGCAAACCTTTCTCTGTTT
LOC_Os05g45420
Os.3393.1.S2_at--352--10031Chr05:26263975..26263999 (25 bp)
TAGAGTCCTTGAACCACTTTGCTTG
LOC_Os05g45420
Os.3393.1.S2_at--61--2051Chr05:26263960..26263984 (25 bp)
ACTTTGCTTGTTTACGGTGATCTTT
LOC_Os05g45420
Os.3393.1.S2_at--1014--8831Chr05:26263943..26263967 (25 bp)
TGATCTTTACTAGCCTGATTGCCCA
LOC_Os05g45420
Os.3393.1.S2_at--543--8931Chr05:26263843..26263867 (25 bp)
TGACCGTTGGATACATGCAGAGCTG
LOC_Os05g45420
Target Sequence 
AAGGGTCAGTGGACCACAGCTTCTCTTTCTGGACCTGTGCTCTGCCTTTCTAACTCAGCTGAGAGTCCTTTAATTATGCC
GTTGTCTGCTTCCCAACTGAACTTCCTGCAGCATACCGTGGATTGTCACGTTTCATTTAAGATATGTACATAATGACCAT
AATCCTCCAGTAGATAATATTTCCTGGAGTGTGTAGACGTTAGAGGCTGCCAGTGATGTATTTTGACGGTAATTGGCCAA
ACCAGAGGTAACAGGCAGGAGGCAAACCTTTCTCTGTTTTTTTATTTGCCGTTGTTGTTGTTATATGACGGTTTAGACTT
ATCTAGAGTCCTTGAACCACTTTGCTTGTTTACGGTGATCTTTACTAGCCTGATTGCCCAGCCTGAGAATCACCTCTGTC
GTTATGAAAGTTGAGCAGTTGGCATACTATTGTTGATCCTGCATTCCTTGACAGATGACCGTTGGATACATGCAGAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.3393.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis