Browse Element(s) Details


OsAffx.27319.2.S1_s_at

Description tigr:9633.m04250
TID=OsAffx.27319.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4538011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27319.2.S1_s_at--25--7912Chr05:26248010..26248034 (25 bp)
GGTTCTGGACTTTCTGACATGGACA
NONE
OsAffx.27319.2.S1_s_at--232--8011Chr05:26245884..26245908 (25 bp)
GGAGGACTCTGGTGCCGTTTCTTGA
LOC_Os05g45380
OsAffx.27319.2.S1_s_at--743--4033Chr09:8716374..8716728 (25 bp)
CGTTTCTTGATTCCTCTGCTTGTTT
NONE
OsAffx.27319.2.S1_s_at--801--3192Chr05:26248152..26248176 (25 bp)
CAATCTGTGGATGAACTGGCTGGAA
NONE
OsAffx.27319.2.S1_s_at--140--1211Chr05:26246045..26246069 (25 bp)
AGTTTGTGCACTGCGCAATGCAACC
LOC_Os05g45380
OsAffx.27319.2.S1_s_at--1013--3171Chr05:26246060..26246084 (25 bp)
CAATGCAACCGTAGTGCACTCACTT
LOC_Os05g45380
OsAffx.27319.2.S1_s_at--708--9632Chr05:26246118..26246142 (25 bp)
TCAGGTTCAGGGTCGTTGTTTTGTT
LOC_Os05g45380
OsAffx.27319.2.S1_s_at--1064--10772Chr05:26248290..26248314 (25 bp)
TTGTTCCCCTGTCATGTCAGTTGCA
NONE
OsAffx.27319.2.S1_s_at--930--7112Chr05:26248305..26248329 (25 bp)
GTCAGTTGCATTCTTTCAGGTGTTT
NONE
OsAffx.27319.2.S1_s_at--374--10252Chr05:26248328..26248352 (25 bp)
TTTGGTGCACTCCTGTTTTTCTTTT
NONE
OsAffx.27319.2.S1_s_at--830--6692Chr05:26248384..26248408 (25 bp)
GTTCCATACACGTAATCTTCTCTTG
NONE
Target Sequence 
GGTTCTGGACTTTCTGACATGGACAGCATTGCAGGAGGACTCTGGTGCCGTTTCTTGATTCCTCTGCTTGTTTCACTTTA
GATCGAATTAGAGCATAAAATGATCCTTTTTCAAATGAAGATGGATCTATTCGTTCAAAAAAATGAAGATGGATCGGGCA
CAATCTGTGGATGAACTGGCTGGAAATAATATGCAGTTTGTGCACTGCGCAATGCAACCGTAGTGCACTCACTTCATCGC
CAAAATAAAAAGGAAAAACACCGGGGTTCAGGTTCAGGGTCGTTGTTTTGTTCCCCTGTCATGTCAGTTGCATTCTTTCA
GGTGTTTTGGTGCACTCCTGTTTTTCTTTTTCTTTTTTGTTGGTGAGGGAAATGGTGTTCTGTTCCATACACGTAATCTT
CTCTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27319.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis