Browse Element(s) Details


OsAffx.27318.1.S1_at

Description tigr:9633.m04249
TID=OsAffx.27318.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=LEM3 (ligand-effect modulator 3) family CDC50 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4537011/11LEM3 family/CDC50 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45340OsAffx.27316.1.S1_at11/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45340OsAffx.7824.1.S1_s_at1/115+26217143..26223824DNA polymerase III, delta subunit family protein
LOC_Os05g45350Os.15152.2.S1_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45350Os.15152.1.S1_a_at11/115+26227598..26230909DnaJ domain containing protein, expressed
LOC_Os05g45360NANA5+26234495..26235451hypothetical protein
LOC_Os05g45370Os.11374.1.S1_s_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45370OsAffx.27318.1.S1_at11/115+26239195..26242888LEM3 family/CDC50 family protein, expressed
LOC_Os05g45380OsAffx.27319.2.S1_s_at11/115+26245355..26246307expressed protein
LOC_Os05g45390OsAffx.27319.1.S1_at11/115+26247703..26248228hypothetical protein
LOC_Os05g45400Os.11739.2.A1_a_at11/115+26250545..26254060expressed protein
LOC_Os05g45410Os.40018.1.S1_at11/115+26261154..26263625HSF-type DNA-binding domain containing protein, expressed
LOC_Os05g45420Os.3393.1.S1_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed
LOC_Os05g45420Os.3393.1.S2_at11/115+26263742..26268345SNF1-related protein kinase catalytic alpha subunit KIN10, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009543cellular_componentthylakoid lumen (sensu Viridiplantae)
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27318.1.S1_at--765--4931Chr05:26240539..26240563 (25 bp)
GCTTGGAGCAGTGACAGGACCATTA
LOC_Os05g45370
OsAffx.27318.1.S1_at--1056--8471Chr05:26240510..26240534 (25 bp)
TGGCAGTGATGTTTTCCCCGAAAAT
LOC_Os05g45370
OsAffx.27318.1.S1_at--578--191Chr05:26240487..26240511 (25 bp)
ATTTCCAGAAGGGTGGGCTCATAGG
LOC_Os05g45370
OsAffx.27318.1.S1_at--938--8311Chr05:26240472..26240496 (25 bp)
GGCTCATAGGTGGTGGTCAGCTAAA
LOC_Os05g45370
OsAffx.27318.1.S1_at--1151--3211Chr05:26239890..26239914 (25 bp)
CAAGAGGATCTCATTGTCTGGATGA
LOC_Os05g45370
OsAffx.27318.1.S1_at--639--2351Chr05:26239840..26239864 (25 bp)
AAAGCTCTACGGCAGAATCGAGACG
LOC_Os05g45370
OsAffx.27318.1.S1_at--916--2171Chr05:26239766..26239790 (25 bp)
ACACGTACAGCTTTGGAGGCACCAA
LOC_Os05g45370
OsAffx.27318.1.S1_at--624--2951Chr05:26239743..26239767 (25 bp)
AAGGCGCTGGTTCTTTCTACCACTT
LOC_Os05g45370
OsAffx.27318.1.S1_at--159--9991Chr05:26239726..26239750 (25 bp)
TACCACTTCTTGGATCGGCGGCAAG
LOC_Os05g45370
OsAffx.27318.1.S1_at--454--8351Chr05:26239710..26239734 (25 bp)
GGCGGCAAGAACAATTTCATCGGTT
LOC_Os05g45370
OsAffx.27318.1.S1_at--559--191Chr05:26239697..26239721 (25 bp)
ATTTCATCGGTTTCGCGTATGTGGC
LOC_Os05g45370
Target Sequence 
GCTTGGAGCAGTGACAGGACCATTAAGTTTGGCAGTGATGTTTTCCCCGAAAATTTCCAGAAGGGTGGGCTCATAGGTGG
TGGTCAGCTAAATGAGAAATTACCATTGAGTGAGCAAGAGGATCTCATTGTCTGGATGAGAACAGCTGCACTCCCAACAT
TCAGAAAGCTCTACGGCAGAATCGAGACGGATATAATGGCGAGCGATGAAATCACAGTGGTGATTCAGAACAACTACAAC
ACGTACAGCTTTGGAGGCACCAAGGCGCTGGTTCTTTCTACCACTTCTTGGATCGGCGGCAAGAACAATTTCATCGGTTT
CGCGTATGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27318.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis