Browse Element(s) Details


Os.57131.1.S1_at

Description gb:AK110982.1
DB_XREF= gi:32996191
TID=Os.57131.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57131 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-174-C10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-174-C10, full insert sequence.
FL= gb:AK110982.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4551011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57131.1.S1_at--101--7271Chr05:26303866..26303890 (25 bp)
GTCCATCATATGTATCCTGCAACCA
LOC_Os05g45510
Os.57131.1.S1_at--61--1511Chr05:26303890..26303914 (25 bp)
AGCACCATGCAGTAACTAGTTTCAT
LOC_Os05g45510
Os.57131.1.S1_at--832--31Chr05:26303919..26303943 (25 bp)
ATTGGTGCACAGTGCCAGTTGCTGT
LOC_Os05g45510
Os.57131.1.S1_at--593--4351Chr05:26303933..26303957 (25 bp)
CCAGTTGCTGTGTCACGGTTTTTAT
LOC_Os05g45510
Os.57131.1.S1_at--448--7371Chr05:26303965..26303989 (25 bp)
GTGACATCACACTATGATTTCCATG
LOC_Os05g45510
Os.57131.1.S1_at--807--6951Chr05:26304087..26304111 (25 bp)
GTAGACTCTGTTTATATGCTTCTGC
LOC_Os05g45510
Os.57131.1.S1_at--913--5451Chr05:26304171..26304195 (25 bp)
GAACTGGGCTGATCAATTGGACTAC
LOC_Os05g45510
Os.57131.1.S1_at--1129--5231Chr05:26304287..26304311 (25 bp)
GAATCACTGTGGTGTGTCCTTATTG
LOC_Os05g45510
Os.57131.1.S1_at--774--791Chr05:26304338..26304362 (25 bp)
ATGTGGATTCTACCGACTTTAGTCA
LOC_Os05g45510
Os.57131.1.S1_at--1145--7071Chr05:26304359..26304383 (25 bp)
GTCAATTCAGATTCTAGCTAGTGCT
LOC_Os05g45510
Os.57131.1.S1_at--269--6551Chr05:26304397..26304421 (25 bp)
GATTTTCTATAACTCCCAGCTAATT
LOC_Os05g45510
Target Sequence 
GTCCATCATATGTATCCTGCAACCAGCACCATGCAGTAACTAGTTTCATTTATATTGGTGCACAGTGCCAGTTGCTGTGT
CACGGTTTTTATAAATTCAGTGACATCACACTATGATTTCCATGTTTGTTCAGAGCGGAAGTTGTATAAGTTATGGCTAT
GCAAATGTTAGAGAAACATGCACTGATTAGTTTATGATTTATGAAAGGTTGTTTGTAGACTGTAGACTCTGTTTATATGC
TTCTGCAGATGCTGACTGAACTAGTTCATTCAAAACATACTCAAAATGTCGAGTGGATAAACGCAGAACTGGGCTGATCA
ATTGGACTACCATTTCTAGGTTTATAACTGTAGATGCCATTGGAAGCCAGGATGAAATTGTATGTTGTGTCATTTAGACC
ATTTTAATCCTAAATTGTGTTGAATCACTGTGGTGTGTCCTTATTGATGAATGTTTGGGCTTTGGAGAAACAATGTGGAT
TCTACCGACTTTAGTCAATTCAGATTCTAGCTAGTGCTTTGATTGAATCTTGATTTTCTATAACTCCCAGCTAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57131.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis