Browse Element(s) Details


OsAffx.27322.1.S1_s_at

Description tigr:9633.m04262
TID=OsAffx.27322.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Pollen proteins Ole e I family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4548011/11Pollen proteins Ole e I family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27322.1.S1_s_at--123--4011Chr05:26294936..26294960 (25 bp)
CGTCGTTCACGAGCCAGGAGTGCAG
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--222--8431Chr05:26295019..26295043 (25 bp)
GGCCTGCCGCTCAAGTTCGAGGAGT
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--448--7091Chr05:26295046..26295070 (25 bp)
GTCAAGCGCGACAATGGCCTCCAGG
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--483--2251Chr05:26295106..26295130 (25 bp)
AAATACCCCAACAAGTGCTACTGAT
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--1131--7311Chr05:26295120..26295144 (25 bp)
GTGCTACTGATCCATTGATCCATGT
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--911--3511Chr05:26295140..26295164 (25 bp)
CATGTTGGTGTGTTCGATCGTCGTC
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--32--7211Chr05:26295162..26295186 (25 bp)
GTCGTCGCCAAGATCAGAGACCGGG
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--1091--5971Chr05:26295178..26295202 (25 bp)
GAGACCGGGCCTGAATAAATCGATC
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--59--9811Chr05:26295193..26295217 (25 bp)
TAAATCGATCGGCTAGGCTAATTAA
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--1089--111Chr05:26295217..26295241 (25 bp)
ATTCATTGACTCGATCTTGCATGGG
LOC_Os05g45480
OsAffx.27322.1.S1_s_at--1063--1231Chr05:26295252..26295276 (25 bp)
AGTTGCTGTGGTACGTAGTTAGTGC
LOC_Os05g45480
Target Sequence 
CGTCGTTCACGAGCCAGGAGTGCAGGGTGTACGTGCCCCGGTCGCCGTCGCGCGCGTGCGCCGTCCCCGGCCACGGCAGG
AGGGGCCTGCCGCTCAAGTTCGAGGAGTTCGTCAAGCGCGACAATGGCCTCCAGGGCCTCTACTCCGTCGGCAACTTCGT
CTTCTCCCCCAAATACCCCAACAAGTGCTACTGATCCATTGATCCATGTTGGTGTGTTCGATCGTCGTCGTCGCCAAGAT
CAGAGACCGGGCCTGAATAAATCGATCGGCTAGGCTAATTAATTCATTGACTCGATCTTGCATGGGGAGATGAATTAGTT
GCTGTGGTACGTAGTTAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27322.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis