Browse Element(s) Details


Os.50360.1.S1_at

Description gb:AK120867.1
DB_XREF= gi:37990490
TID=Os.50360.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.50360 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-027-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023025I17, full insert sequence.
FL= gb:AK120867.1 gb:AK059402.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4549011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45430OsAffx.27321.1.S1_at11/115+26273188..26275243Leucine Rich Repeat family protein, expressed
LOC_Os05g45440Os.50268.1.S1_at10/115+26283127..26283809expressed protein
LOC_Os05g45450Os.30063.1.S1_at11/115+26285009..26285752nuclear protein, putative, expressed
LOC_Os05g45460Os.9327.1.S1_at11/115+26288216..26289586Pollen proteins Ole e I family protein, expressed
LOC_Os05g45470OsAffx.4624.1.S1_at10/115+26291350..26292603hypothetical protein
LOC_Os05g45470OsAffx.25616.5.S1_x_at1/115+26291350..26292603hypothetical protein
LOC_Os05g45480OsAffx.27322.1.S1_s_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45480OsAffx.27322.1.S1_at11/115+26293970..26295378Pollen proteins Ole e I family protein, expressed
LOC_Os05g45490Os.50360.1.S1_at11/115+26296555..26301037expressed protein
LOC_Os05g45500OsAffx.15113.1.S1_at11/115+26301531..26302452expressed protein
LOC_Os05g45510Os.57131.1.S1_at11/115+26302594..26304437expressed protein
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50360.1.S1_at--1147--411Chr05:26300270..26300294 (25 bp)
ATCATCAGAGAGCACATTCCCATCA
LOC_Os05g45490
Os.50360.1.S1_at--82--6451Chr05:26300348..26300372 (25 bp)
GATCAAATTAGTTTCAGCACCGTCC
LOC_Os05g45490
Os.50360.1.S1_at--637--591Chr05:26300402..26300426 (25 bp)
ATGCCTGAAATGTTCCTGGACTGCG
LOC_Os05g45490
Os.50360.1.S1_at--583--2571Chr05:26300685..26300709 (25 bp)
AACGGCCAGTGAACCATCTCGAAAA
LOC_Os05g45490
Os.50360.1.S1_at--930--5551Chr05:26300727..26300751 (25 bp)
GAAAGCTCCTCCATCAAAGAAGTCT
LOC_Os05g45490
Os.50360.1.S1_at--439--6311Chr05:26300817..26300841 (25 bp)
GATGACTGATACTACTACCTGGCAA
LOC_Os05g45490
Os.50360.1.S1_at--491--8391Chr05:26300848..26300872 (25 bp)
GGCGCATGATGATCCAGGGCTCTTT
LOC_Os05g45490
Os.50360.1.S1_at--72--8331Chr05:26300865..26300889 (25 bp)
GGCTCTTTCCTCTTTGTTGACACAA
LOC_Os05g45490
Os.50360.1.S1_at--126--3311Chr05:26300885..26300909 (25 bp)
CACAATTCACTTTGCTGGAGGGCGA
LOC_Os05g45490
Os.50360.1.S1_at--592--6131Chr05:26300902..26300926 (25 bp)
GAGGGCGAGCTCATTCTATTAGGAC
LOC_Os05g45490
Os.50360.1.S1_at--45--10311Chr05:26300944..26300968 (25 bp)
TTTCCCTCCGACGAGATTTGTTCAT
LOC_Os05g45490
Target Sequence 
ATCATCAGAGAGCACATTCCCATCACGAATCTCTTCACATGNCTTTGGTTCAATGAAGTTGACCGTTNCACCTCCAGGGA
TCAAATTAGTTTCAGCACCGTCCNGGGACAAAATAAGGGCTAGAGTTGGCTGGATGCCTGAAATGTTCCTGGACTGCGAA
AGACGCAACNTTCGTTATTCAGGGATACCNCAGGGAGCTACTAGAGCAAANTGNATTGCATNCCGGNTTGGAANGCCCCC
TCCAACGGCCAGTGAACCATCTCGAAAACTCAGATTAGGTAGCAGGAAAGCTCCTCCATCAAAGAAGTCTTCCATGAAGC
GGAAAAGAGTGAAGAAATCGAGCTCGCGGAGGCGTCTCCCCAAACCAATCACTAGGATGACTGATACTACTACCTGGCAA
AAGTTGGGCGCATGATGATCCAGGGCTCTTTCCTCTTTGTTGACACAATTCACTTTGCTGGAGGGCGAGCTCATTCTATT
AGGACACATACTTGTAGTTTTTTTTCCCTCCGACGAGATTTGTTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis