Browse Element(s) Details


OsAffx.27327.1.S1_at

Description tigr:9633.m04273
TID=OsAffx.27327.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hexokinase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4559011/11Hexokinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45600Os.40855.2.S1_x_at9/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_x_at3/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_at1/115+26346700..26350370hypothetical protein
LOC_Os05g45610Os.57158.1.S1_at2/115+26352082..26352339hypothetical protein
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27327.1.S1_at--703--611Chr05:26336796..26336820 (25 bp)
ATGCTGAAAGTTTGAATCCTGGTGA
LOC_Os05g45590
OsAffx.27327.1.S1_at--643--5251Chr05:26336713..26336807 (25 bp)
GAATCCTGGTGAACAGGTTTACGAA
LOC_Os05g45590
OsAffx.27327.1.S1_at--1122--6811Chr05:26336697..26336721 (25 bp)
GTTTACGAAAAGTTGATCTCTGGCA
LOC_Os05g45590
OsAffx.27327.1.S1_at--1011--10771Chr05:26336685..26336709 (25 bp)
TTGATCTCTGGCATGTATTTGGGAG
LOC_Os05g45590
OsAffx.27327.1.S1_at--1076--5971Chr05:26336663..26336687 (25 bp)
GAGAAATTGTTCGTAGAGTCCTATT
LOC_Os05g45590
OsAffx.27327.1.S1_at--943--1331Chr05:26336649..26336673 (25 bp)
AGAGTCCTATTAAAGATGGCTGAAG
LOC_Os05g45590
OsAffx.27327.1.S1_at--148--1451Chr05:26336626..26336650 (25 bp)
AGAAGCTTCTCTTTTTGGTGATGAA
LOC_Os05g45590
OsAffx.27327.1.S1_at--78--6971Chr05:26336601..26336625 (25 bp)
GTACCACCAAAACTCAAGATTCCAT
LOC_Os05g45590
OsAffx.27327.1.S1_at--199--6591Chr05:26336164..26336608 (25 bp)
GATTCCATTTATTATCAGGACTCCA
LOC_Os05g45590
OsAffx.27327.1.S1_at--865--10151Chr05:26336152..26336173 (22 bp)
TATCAGGACTCCATACATGTCAATG
LOC_Os05g45590
OsAffx.27327.1.S1_at--857--331Chr05:26336140..26336164 (25 bp)
ATACATGTCAATGATGCACTGCGAC
LOC_Os05g45590
Target Sequence 
ATGCTGAAAGTTTGAATCCTGGTGAACAGGTTTACGAAAAGTTGATCTCTGGCATGTATTTGGGAGAAATTGTTCGTAGA
GTCCTATTAAAGATGGCTGAAGAAGCTTCTCTTTTTGGTGATGAAGTACCACCAAAACTCAAGATTCCATTTATTATCAG
GACTCCATACATGTCAATGATGCACTGCGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27327.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis