Browse Element(s) Details


Os.57158.1.S1_at

Description gb:AK111043.1
DB_XREF= gi:32996252
TID=Os.57158.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57158 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-175-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-175-B07, full insert sequence.
FL= gb:AK111043.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g456102/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45600Os.40855.2.S1_x_at9/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_x_at3/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_at1/115+26346700..26350370hypothetical protein
LOC_Os05g45610Os.57158.1.S1_at2/115+26352082..26352339hypothetical protein
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45640NANA5+26370048..26372649retrotransposon protein, putative, unclassified
LOC_Os05g45650Os.28943.1.S1_x_at1/115+26373275..26376489retrotransposon protein, putative, unclassified

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57158.1.S1_at--98--1631Chr05:26352398..26352422 (25 bp)
AGCGGAATCACTTCCAGTGAGTCTC
NONE
Os.57158.1.S1_at--969--10671Chr05:26352387..26352411 (25 bp)
TTCCAGTGAGTCTCGAATCCGCCAC
NONE
Os.57158.1.S1_at--748--9211Chr05:26352362..26352386 (25 bp)
TCCAACGAAGCGCACACGAGAGAGA
NONE
Os.57158.1.S1_at--29--9371Chr05:26352194..26352218 (25 bp)
TCGACCGCGCCCAGGAGGCCATGGA
LOC_Os05g45610
Os.57158.1.S1_at--963--1351Chr05:26352106..26352130 (25 bp)
AGACGACGTCGCGACGTCCAAGGAC
LOC_Os05g45610
Os.57158.1.S1_at--1152--4791Chr05:26351975..26351999 (25 bp)
GCTCGTAGCGGAGCTGCAATCTTGC
NONE
Os.57158.1.S1_at--866--10451Chr05:26351916..26351940 (25 bp)
TTACCAACAGACTTGAGCATGCATG
NONE
Os.57158.1.S1_at--400--4991Chr05:26351900..26351924 (25 bp)
GCATGCATGTCGTTCTCTTCATAGA
NONE
Os.57158.1.S1_at--692--3311Chr05:26351874..26351898 (25 bp)
CACAGTTACTGTCTTGCTGATGAAC
NONE
Os.57158.1.S1_at--1001--9111Chr05:26351844..26351868 (25 bp)
TGCTGAAGTGCAAATGGGCGCTACT
NONE
Os.57158.1.S1_at--738--2971Chr05:26351833..26351856 (24 bp)
AATGGGCGCTACTGAATTTGTCGAA
NONE
Target Sequence 
AGCGGAATCACTTCCAGTGAGTCTCGAATCCGCCACTCCAACGAAGCGCACACGAGAGAGAAGGGAGGGAGGAAAGAATC
GCGATGAGAGGCGCGCTCGGCGGCNGGAGCCGGGCGCGGCAGAACGCGATGCGGTCGGGCCTGGTGGTGCTGGGCGCCGC
CGCCTTCGGCTACCTCTCCTTCCGCGTCGGCTTCAAGCCCTACCTCGACCGCGCCCAGGAGGCCATGGACGACACCACCC
ACCACGGCTCCGCCTCCGGTGCCGCCGCCCAGCCTGACCACGCCGGGGAAGAAGACGACGTCGCGACGTCCAAGGACCCG
GCCGTCGTGCTCCGCGACTGAGGCCGCTCGTCNAANCNTCCGTAGAGGTTGGTGCCTTTTGCTTTTGGNTTGGTTGTGCC
NTTCCNGTNNAACACCTTGNTGTGCNGCTCGTAGCGGAGCTGCAATCTTGCNCNGGAGAGTGCTGTTGCNGAATAAACNC
TTCACATTACCAACAGACTTGAGCATGCATGTCGTTCTCTTCATAGAACACAGTTACTGTCTTGCTGATGAACATAAGTG
CTGAAGTGCAAATGGGCGCTACTGAATTTGTCGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis