Browse Element(s) Details


OsAffx.6484.1.A1_at

Description tigr:9637.m02983
TID=OsAffx.6484.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g455801/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45520OsAffx.27325.2.S1_x_at11/115+26306006..26308010hypothetical protein
LOC_Os05g45520OsAffx.27325.1.S1_x_at6/115+26306006..26308010hypothetical protein
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45600Os.40855.2.S1_x_at9/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_x_at3/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_at1/115+26346700..26350370hypothetical protein
LOC_Os05g45610Os.57158.1.S1_at2/115+26352082..26352339hypothetical protein
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.6484.1.A1_at--882--8496Chr02:33242894..33242918 (25 bp)
TGGCATGGATCCAATGGTTCAAAAT
NONE
OsAffx.6484.1.A1_at--5--7995Chr08:6146441..6146465 (25 bp)
GGATCCAATGGTTCAAAATCTGTAA
NONE
OsAffx.6484.1.A1_at--283--10559Chr11:14503839..14503863 (25 bp)
TTCTTCCCCAAATTTCATTCGAATG
NONE
OsAffx.6484.1.A1_at--274--5277Chr03:7028894..7028918 (25 bp)
GAATGACATATAGCAATCCCGATAA
NONE
OsAffx.6484.1.A1_at--1026--9991Chr09:20456837..20456861 (25 bp)
TAGCAATCCCGATAAAGAATCTAAG
NONE
OsAffx.6484.1.A1_at--351--7771Chr09:20456769..20456793 (25 bp)
GGTGAATGGGAGATAGCAGACCAAT
NONE
OsAffx.6484.1.A1_at--1055--1331Chr09:20456752..20456776 (25 bp)
AGACCAATAGTAGCGGTGGACGGTA
NONE
OsAffx.6484.1.A1_at--15--1071Chr09:20456727..20456751 (25 bp)
AGGGTATAGGCGGAGCCACGTGGTT
NONE
OsAffx.6484.1.A1_at--661--8611Chr09:20456675..20456699 (25 bp)
TGGGAATGTCAGACCCGTAGTGGTT
NONE
OsAffx.6484.1.A1_at--421--7091Chr09:20456668..20456692 (25 bp)
GTCAGACCCGTAGTGGTTAGTAGAC
NONE
OsAffx.6484.1.A1_at--884--4231Chr09:20456661..20456685 (25 bp)
CCGTAGTGGTTAGTAGACAGGAAAT
NONE
Target Sequence 
TGGCATGGATCCAATGGTTCAAAATCTGTAAGATTTCTTCCCCAAATTTCATTCGAATGACATATAGCAATCCCGATAAA
GAATCTAAGAATTAGGATTTCGGGGTTAGGAGGTGGTAGAGGAGGATAGAGTGGTGAATGGGAGATAGCAGACCAATAGT
AGCGGTGGACGGTAAGGGTATAGGCGGAGCCACGTGGTTGGAGGAGGACGGTGGATGGGTTGGCGGTGGGAATGTCAGAC
CCGTAGTGGTTAGTAGACAGGAAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.6484.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis