Browse Element(s) Details


Os.17535.1.S1_at

Description gb:AK106711.1
DB_XREF= gi:32991920
TID=Os.17535.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.17535 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-F05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-F05, full insert sequence.
FL= gb:AK106711.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g4559011/11Hexokinase 2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g45530OsAffx.27323.1.S1_at11/115+26311781..26312590hypothetical protein
LOC_Os05g45540NANA5+26314056..26314631hypothetical protein
LOC_Os05g45550NANA5+26315842..26319919retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g45560OsAffx.28338.3.A1_x_at11/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.17065.1.A1_s_at2/115+26323008..26323946hypothetical protein
LOC_Os05g45560OsAffx.5300.2.S1_at1/115+26323008..26323946hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_x_at11/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.1.S1_at9/115+26324538..26329375hypothetical protein
LOC_Os05g45570OsAffx.27325.2.S1_x_at6/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53071.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45570Os.53709.1.S1_at1/115+26324538..26329375hypothetical protein
LOC_Os05g45580OsAffx.27326.1.S1_at11/115+26330823..26334020expressed protein
LOC_Os05g45580OsAffx.6484.1.A1_at1/115+26330823..26334020expressed protein
LOC_Os05g45590OsAffx.27327.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45590Os.17535.1.S1_at11/115+26335406..26339243Hexokinase 2, putative, expressed
LOC_Os05g45600Os.40855.2.S1_x_at9/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_x_at3/115+26346700..26350370hypothetical protein
LOC_Os05g45600Os.40855.4.S1_at1/115+26346700..26350370hypothetical protein
LOC_Os05g45610Os.57158.1.S1_at2/115+26352082..26352339hypothetical protein
LOC_Os05g45620NANA5+26354997..26359658retrotransposon protein, putative, unclassified
LOC_Os05g45630OsAffx.22947.1.S1_x_at8/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.2.S1_x_at7/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.3.S1_x_at6/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_x_at4/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g45630OsAffx.22947.5.S1_at2/115+26362784..26367358retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0009747biological_processhexokinase-dependent signaling
GO:0010182biological_processsugar mediated signaling
GO:0005739cellular_componentmitochondrion
GO:0004396molecular_functionhexokinase activity
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17535.1.S1_at--118--6191Chr05:26335645..26335669 (25 bp)
GAGGAGCTCTAGTGGATCTCTTCTC
LOC_Os05g45590
Os.17535.1.S1_at--688--6411Chr05:26335631..26335655 (25 bp)
GATCTCTTCTCTTGGCAGCTGTTAT
LOC_Os05g45590
Os.17535.1.S1_at--931--3751Chr05:26335623..26335647 (25 bp)
CTCTTGGCAGCTGTTATGCTTTAGT
LOC_Os05g45590
Os.17535.1.S1_at--688--3591Chr05:26335556..26335580 (25 bp)
CATTCTATAGAGTTGCACCAGCACC
LOC_Os05g45590
Os.17535.1.S1_at--778--291Chr05:26335550..26335574 (25 bp)
ATAGAGTTGCACCAGCACCGTGCTG
LOC_Os05g45590
Os.17535.1.S1_at--1103--3331Chr05:26335535..26335559 (25 bp)
CACCGTGCTGGTGTTTAGAACTTTA
LOC_Os05g45590
Os.17535.1.S1_at--174--5471Chr05:26335518..26335542 (25 bp)
GAACTTTAGATGGAGGCACCAACCT
LOC_Os05g45590
Os.17535.1.S1_at--179--931Chr05:26335505..26335529 (25 bp)
AGGCACCAACCTTTAGTAGCTTGCA
LOC_Os05g45590
Os.17535.1.S1_at--7--6971Chr05:26335490..26335514 (25 bp)
GTAGCTTGCAAGTCCTGTAAACTGT
LOC_Os05g45590
Os.17535.1.S1_at--742--9831Chr05:26335464..26335488 (25 bp)
TAAACGCAGAACACAGTATTGTCCT
LOC_Os05g45590
Os.17535.1.S1_at--496--8691Chr05:26335445..26335469 (25 bp)
TGTCCTTCCAACAAATTTCCGGCTA
LOC_Os05g45590
Target Sequence 
GAGGAGCTCTAGTGGATCTCTTCTCTTGGCAGCTGTTATGCTTTAGTTNTTTGGATTTTCCTGAGATTCTGAACCCNCAG
GAGCAATTGCATTCTATAGAGTTGCACCAGCACCGTGCTGGTGTTTAGAACTTTAGATGGAGGCACCAACCTTTAGTAGC
TTGCAAGTCCTGTAAACTGTATAAACGCAGAACACAGTATTGTCCTTCCAACAAATTTCCGGCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17535.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis