Browse Element(s) Details


Os.16659.1.S2_at

Description gb:AK120078.1
DB_XREF= gi:37989701
TID=Os.16659.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.16659 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-170-F07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013011B03, full insert sequence.
FL= gb:AK109455.1 gb:AK110740.1 gb:AK120078.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4943011/11Prp18 domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein
LOC_Os03g49464Os.24106.3.S1_at6/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.46481.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464OsAffx.28164.2.S1_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49464Os.52574.2.S1_x_at1/113+28101114..28108150pentatricopeptide, putative, expressed
LOC_Os03g49480Os.24106.2.A1_at9/113+28109221..28110521GNS1/SUR4 family protein, expressed
LOC_Os03g49490Os.16054.1.S1_at10/113+28113985..28116602expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0008380biological_processRNA splicing
GO:0005681cellular_componentspliceosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.16659.1.S2_at--700--491Chr03:28088650..28088674 (25 bp)
ATCGGCGTCACGATGGTGGGCATCC
LOC_Os03g49430
Os.16659.1.S2_at--692--3391Chr03:28088591..28088615 (25 bp)
CAGCGTGGCGCACATCATGAACGAC
LOC_Os03g49430
Os.16659.1.S2_at--1131--931Chr03:28088557..28088581 (25 bp)
AGGAAGTACCTGCAGTCCGTGAAGA
LOC_Os03g49430
Os.16659.1.S2_at--1020--8331Chr03:28088532..28088556 (25 bp)
GGCTGATGACCTTCTGCCAGAGGAA
LOC_Os03g49430
Os.16659.1.S2_at--1079--2731Chr03:28088419..28088443 (25 bp)
AAGAACTCGGAGGAGACGCTTCGGC
LOC_Os03g49430
Os.16659.1.S2_at--1031--11Chr03:28088227..28088251 (25 bp)
ATTGGTACACCATCTAGTCGTCCTT
LOC_Os03g49430
Os.16659.1.S2_at--687--9531Chr03:28088215..28088239 (25 bp)
TCTAGTCGTCCTTGACTGTCAATTA
LOC_Os03g49430
Os.16659.1.S2_at--1106--3131Chr03:28088195..28088219 (25 bp)
AATTACTCAATTGCCGCTGTGATTA
LOC_Os03g49430
Os.16659.1.S2_at--741--3991Chr03:28088161..28088185 (25 bp)
CGTGTGCTGCTGGACTGTGTATTCA
LOC_Os03g49430
Os.16659.1.S2_at--220--9651Chr03:28088139..28088163 (25 bp)
TCAGTTATCCACTATATCCTGTCGC
LOC_Os03g49430
Os.16659.1.S2_at--678--3611Chr03:28088113..28088137 (25 bp)
CTTGGAGGCTTGGACTGTGTTAATT
LOC_Os03g49430
Target Sequence 
ATCGGCGTCACGATGGTGGGCATCCACGAGCGCTCGGCGCGCGAGAAGATCTACGCCAACAGCGTGGCGCACATCATGAA
CGACGAGACGACCAGGAAGTACCTGCAGTCCGTGAAGAGGCTGATGACCTTCTGCCAGAGGAAGTACCCGACGGACCCGT
CCAGGTCGGTGGAGTTCAACAGCCTGGCCAACGGCAGCGACCTGCAGTCCCTCCTGGCGGAGCAGAACTCCAAGAACTCG
GAGGAGACGCTTCGGCTGGTGGCCGCGTCGTGACGATGGAGGAACCTGTCCGCGTGTGGTGGAATTGATGGTGGTCTCCT
CTTTACGCCCGTTAGCAATTTGCCATTGCACTTTGCACATTAGTAATTGGAAATCATTACAGGCGTGCTGCTGGCGTGCT
TCCTCGCTGATTATAAATTGCACATTGGTACACCATCTAGTCGTCCTTGACTGTCAATTACTCAATTGCCGCTGTGATTA
AATTACAGGCGTGTGCTGCTGGACTGTGTATTCAGTTATCCACTATATCCTGTCGCCCTTGGAGGCTTGGACTGTGTTAA
TT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.16659.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis