Browse Element(s) Details


Os.49792.1.S1_x_at

Description gb:AK111607.1
DB_XREF= gi:37988270
TID=Os.49792.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013105K15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013105K15, full insert sequence.
FL= gb:AK111607.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4940011/11Natural resistance-associated macrophage protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49350OsAffx.23548.1.S1_x_at1/113+28039240..28043641Lipoxygenase 3, putative, expressed
LOC_Os03g49360OsAffx.25641.1.S1_at11/113+28043803..28047310expressed protein
LOC_Os03g49380Os.14415.1.S1_a_at11/113+28056077..28062460Lipoxygenase 3, putative, expressed
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed
LOC_Os03g49430Os.16659.1.S2_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49430Os.16659.1.S1_at11/113+28088079..28091128Prp18 domain containing protein, expressed
LOC_Os03g49440Os.5147.1.S1_at11/113+28092272..28095500Phosphatase, putative, expressed
LOC_Os03g49450OsAffx.25642.1.S1_at6/113+28097080..28098412hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006828biological_processmanganese ion transport
GO:0006875biological_processmetal ion homeostasis
GO:0006979biological_processresponse to oxidative stress
GO:0008219biological_processcell death
GO:0009408biological_processresponse to heat
GO:0009723biological_processresponse to ethylene stimulus
GO:0009725biological_processresponse to hormone stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009789biological_processpositive regulation of abscisic acid mediated signaling
GO:0009871biological_processjasmonic acid and ethylene-dependent systemic resistance, ethylene mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0009926biological_processauxin polar transport
GO:0010182biological_processsugar mediated signaling
GO:0015691biological_processcadmium ion transport
GO:0015692biological_processlead ion transport
GO:0030001biological_processmetal ion transport
GO:0005384molecular_functionmanganese ion transporter activity
GO:0015103molecular_functioninorganic anion transporter activity
GO:0046873molecular_functionmetal ion transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49792.1.S1_x_at--279--2231Chr03:28070312..28070336 (25 bp)
ACAAGGCACCTCCAATTTCTGATGA
LOC_Os03g49400
Os.49792.1.S1_x_at--335--6311Chr03:28070332..28070356 (25 bp)
GATGACCCAACATCTCTTACTTTGA
LOC_Os03g49400
Os.49792.1.S1_x_at--639--10411Chr03:28070382..28070406 (25 bp)
TTATCGTGGCAGTAACCTCTCAAGA
LOC_Os03g49400
Os.49792.1.S1_x_at--167--2771Chr03:28070403..28070427 (25 bp)
AAGACTGCCTGGTTTGGGTCGTGCA
LOC_Os03g49400
Os.49792.1.S1_x_at--1054--5391Chr03:28070578..28070602 (25 bp)
GAAGCTTCTAGGAGCCCCTTGATGA
LOC_Os03g49400
Os.49792.1.S1_x_at--516--5591Chr03:28070634..28070658 (25 bp)
GAAATCATGGGACTCACGTGCTAAG
LOC_Os03g49400
Os.49792.1.S1_x_at--21--8211Chr03:28070658..28070682 (25 bp)
GGAAGTCTCTAGTCCAGGCTTTAAT
LOC_Os03g49400
Os.49792.1.S1_x_at--806--10151Chr03:28070738..28070762 (25 bp)
TATCTAATGCTGACATCCCAAGGCC
LOC_Os03g49400
Os.49792.1.S1_x_at--1047--871Chr03:28070758..28070782 (25 bp)
AGGCCAACTAGCACCTTGTTTGAAC
LOC_Os03g49400
Os.49792.1.S1_x_at--879--151Chr03:28070804..28070828 (25 bp)
ATTATAATGTCCCATCTTACCCTGA
LOC_Os03g49400
Os.49792.1.S1_x_at--707--391Chr03:28070864..28070888 (25 bp)
ATCACCTGGCAACCTCTTTGAAAAG
LOC_Os03g49400
Target Sequence 
ACAAGGCACCTCCAATTTCTGATGACCCAACATCTCTTACTTTGAGCAAGGGGAGAGACTCTGATGCTGGTTATCGTGGC
AGTAACCTCTCAAGACTGCCTGGTTTGGGTCGTGCAGCAAGGAGGCAATTAGCAGCGATTCTTGATGAGTTCTGGGGACA
TCTCTTTGATTATCATGGTAAGCTAACGCAAGAAGCTAATGCAGGAAGGTTCAACTTTCTGCTAGGACCATACCCGAAAG
CAGTTAGAAGTGATAACCAAGCCATCGAAGCTTCTAGGAGCCCCTTGATGAGAGATGCAATACGAGGATCAGCTACCATA
CAGAAATCATGGGACTCACGTGCTAAGGAAGTCTCTAGTCCAGGCTTTAATTTTGTGCTTCAGATGGGTCGCATTGGATC
ATCAAACTGGTCTGAGAGCATGCGTTTATCTAATGCTGACATCCCAAGGCCAACTAGCACCTTGTTTGAACAAAATACTC
AGTTTTATTCAAATTATAATGTCCCATCTTACCCTGACAATCAGTTCTATCAACCTGCTACCATTCATGGCTATCACCTG
GCAACCTCTTTGAAAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49792.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis