Browse Element(s) Details


Os.14415.1.S1_a_at

Description gb:AK072689.1
DB_XREF= gi:32982712
TID=Os.14415.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=4
UG=Os.14415 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-202-H08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023143H13, full insert sequence.
FL= gb:AK072689.1 gb:AK071121.1 gb:AK105792.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4938011/11Lipoxygenase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g49340OsAffx.1319.1.S1_at1/113+28033052..28036135transposon protein, putative, Mariner sub-class
LOC_Os03g49350OsAffx.23548.1.S1_x_at1/113+28039240..28043641Lipoxygenase 3, putative, expressed
LOC_Os03g49360OsAffx.25641.1.S1_at11/113+28043803..28047310expressed protein
LOC_Os03g49380Os.14415.1.S1_a_at11/113+28056077..28062460Lipoxygenase 3, putative, expressed
LOC_Os03g49400Os.32159.1.S1_a_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49400Os.49792.1.S1_x_at11/113+28065794..28073391Natural resistance-associated macrophage protein, expressed
LOC_Os03g49410OsAffx.3557.1.S1_at10/113+28074526..28075312hypothetical protein
LOC_Os03g49410OsAffx.27323.1.S1_at1/113+28074526..28075312hypothetical protein
LOC_Os03g49420Os.7742.1.S1_a_at11/113+28077890..28086288HEAT repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009414biological_processresponse to water deprivation
GO:0009611biological_processresponse to wounding
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009688biological_processabscisic acid biosynthesis
GO:0009695biological_processjasmonic acid biosynthesis
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009753biological_processresponse to jasmonic acid stimulus
GO:0009816biological_processdefense response to pathogenic bacteria, incompatible interaction
GO:0030397biological_processmembrane disassembly
GO:0040007biological_processgrowth
GO:0009507cellular_componentchloroplast
GO:0016165molecular_functionlipoxygenase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14415.1.S1_a_at--1056--8971Chr03:28062078..28062102 (25 bp)
TGAACGGCAACTCGGCGCTCAAGAA
LOC_Os03g49380
Os.14415.1.S1_a_at--891--7351Chr03:28062116..28062140 (25 bp)
GTGAAGATGCCGTACATGCTGCTGT
LOC_Os03g49380
Os.14415.1.S1_a_at--795--2171Chr03:28062147..28062171 (25 bp)
ACACGTCGGATGTCACCAAGGAGAA
LOC_Os03g49380
Os.14415.1.S1_a_at--659--471Chr03:28062209..28062233 (25 bp)
ATCTCCATCTGAGTCTCGCGTGCAT
LOC_Os03g49380
Os.14415.1.S1_a_at--673--6391Chr03:28062240..28062264 (25 bp)
GATCGATATACGTGTGCTATTGCTA
LOC_Os03g49380
Os.14415.1.S1_a_at--593--3691Chr03:28062256..28062280 (25 bp)
CTATTGCTAGTGTTGCGCGTTTGCC
LOC_Os03g49380
Os.14415.1.S1_a_at--933--10271Chr03:28062275..28062299 (25 bp)
TTTGCCGTCGTCGATTTGTTTCATT
LOC_Os03g49380
Os.14415.1.S1_a_at--687--6831Chr03:28062292..28062316 (25 bp)
GTTTCATTGTTTGTATCAGTGTGCA
LOC_Os03g49380
Os.14415.1.S1_a_at--1081--7451Chr03:28062310..28062334 (25 bp)
GTGTGCATTACCGTGATTCTTCGTA
LOC_Os03g49380
Os.14415.1.S1_a_at--448--6571Chr03:28062324..28062348 (25 bp)
GATTCTTCGTAGTTCAGGGTCTCAG
LOC_Os03g49380
Os.14415.1.S1_a_at--475--7691Chr03:28062340..28062364 (25 bp)
GGGTCTCAGGGATAAGTCGTTGCAA
LOC_Os03g49380
Target Sequence 
TGAACGGCAACTCGGCGCTCAAGAACCGGAACGGGCCGGTGAAGATGCCGTACATGCTGCTGTACCCCAACACGTCGGAT
GTCACCAAGGAGAAGGGCCAAGGGCTCACCGCCATGGGCATCCCCAACAGCATCTCCATCTGAGTCTCGCGTGCATTTCT
TTAGATCGATATACGTGTGCTATTGCTAGTGTTGCGCGTTTGCCGTCGTCGATTTGTTTCATTGTTTGTATCAGTGTGCA
TTACCGTGATTCTTCGTAGTTCAGGGTCTCAGGGATAAGTCGTTGCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14415.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis